BAC Information

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BAC

Clone NameMSMg01-513N09
Chromosome5 (Build37)
Map Location 9,515,969 - 9,516,130
singlet/doubletsinglet
Overlap geneGrm3
Upstream geneGm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513N09.T7 (MSMg01no513_n09.b1)MSMg01-513N09.TJ (MSMg01no513_n09.g1)
ACCAG586463AG586464
length811765
length of high quality
(start - end)		175 (41 - 215)587 (72 - 658)
definitionCHROMAT_FILE: MSMg01no513_n09.b1 PHD_FILE: MSMg01no513_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:29 2005CHROMAT_FILE: MSMg01no513_n09.g1 PHD_FILE: MSMg01no513_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
GGGTCCTAATGCTTACAAAGCAAACATTATACCAACTGAGCTGTCTCTCA
GCCTTAATATTTGGAACTTAAAAATCTTGATAGACTTTGGCATAAGTCTT
CTTGGTTTTTGGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGAGNGANAANNAANANNAAACCAAAAANNAAAAAAAAA
AAANAANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAT
AAAAAAAAAAATTTTTTTTANTATTATATAATTTTTACAAATTTTTTTTT
ATTATTTTTTATTATTTTTTAAAAAAATTTATAAATATATTATTTATCAT
TTTTATTTTTTCCCCCCCCCCCGGGGGACCAAATTCCTTCACATCGACTC
ACCCCATATCTTTTTCTTTCCTACCACAACTTCCCCATCTGTATTATAGA
CTGACACTTTCGTCCGCATTTTTTCTCTCTCCCCTCACCATTCCTATATA
TCCATAATCTATCTCCCACATTTACCTAACTTTTCCTTTACATTCTTATG
ATCTCTCCCTATTTTCCCATTTCCACAATACCCCTCATCCCCACCTTTTT
TATCAACCATGACCCCTCATTCATTNCCTGTTGCCTACACCTATATCAAC
AATACAAACATATTCTGATATTAACACTACCACTATAATTTCTCATCCGT
CCCGTTTATACTTATTTTTCACACTCATGTCAGCATGATTTCCCCTTATT
CTACCCTCAAG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTATGGGTTGGTGAAGAGTCCATATATAA
TTTTTTTGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAAGAA
ATCCTGACTCCAAGTGGATCACCAAACCGTCCACAACCACAGAGATCTGC
TGGACAAAAGAGCCGTGGCCTTGTGGTTCCTGCTGTGCAGCCTGGAGAAG
GCACAATACTCTCCAGCTCCACCATTACAGCTAATACACGTGATATTTGT
AAAATTCATGTCCAATAAACAATTAGGACAGTCTAAATAAATAAGCTGTC
TTCAGGCGCACCAGAAGAGGGCGTCAAATCTCATTGTGGGTGGTTGTGAG
CCACTGTGTGGTTGCTCGGATTTGAACTCAGGACCTTCGGAAGAGAAGTT
AGTGCTCTTACCCACTGAGCCATCTTACCAGCCCCTGACTTGCTTTTTGA
TCGTTATGTTTAAACCCATAAGCTGCTGTGTGGTAGTAATGTTTATGTGG
TTCATGTAGTTACAGTGGCAATACTTACACAGCAGCTACTCTAATGTAGG
CACCATTTCAACTGCACTTATATGTGTGTTAACTAATTTAACTTCCACAA
CCTTGTGAGACTAATGCATTGTTAATCCCTTAGAAGAGGAAAAAAGAGAA
CTGAGCTGCTTTGTCATACTGGATCTAATTTCAGCCTCCTGTCCTTATAT
ATGTGCGTGCATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_n09.b1 MSMg01no513_n09.b1 CHROMAT_FILE:
MSMg01no513_n09.b1 PHD_FILE: MSMg01no513_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:29 2005
         (175 letters)



>mm_chr5_9515806_9516380
          Length = 575

 Score =  306 bits (158), Expect = 6e-88
 Identities = 161/162 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgggtcctaatgcttacaaagcaaacattataccaactgagctgtctctcagcct 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattcgggtcataatgcttacaaagcaaacattataccaactgagctgtctctcagcct 266

                                                                       
Query: 65  taatatttggaacttaaaaatcttgatagactttggcataagtcttcttggtttttggtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatatttggaacttaaaaatcttgatagactttggcataagtcttcttggtttttggtt 206

                                                     
Query: 125 ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 166
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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