XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
TTGAGTCTGATACATGCTGGACTGCTGACGAGCAGAGCCTTTACTCATTT
GTCTCAGGTGGATGTATGTAATCATTTACTACCTTTTGATTAAAGGACCC
AGGCTTATGAAAATCCATTTGGGCTCCGCAAAGGAAAACGGTCCAGTTGT
AGATTGTTCATTTATACTACACTATAGTCAAAATAAATTAACCTGTCACA
TATGTGGATTAATTTCAGAAGCATTTTTTGATGTTTTGATATTTGATACT
AAAATGCAAAGAAATTTGCAAAATAAATGCCTCTGTGTCAATACACAGAA
ATATACAATATAATGCAATGTTTACATGTTCACTGGGAAATGATAGTAAA
CACCTTCCAGATTTTTGGTAACAGTTCCTAGTGGGCAAGGAATAATTAAA
CATTATGAATTAAATCTTGTCTCTAATGTTTTGTTTCTAAATCTAAGGAG
CTGTAGATGGAATAGGAGAAAAAAAATGACAGCATTGAGAATTATTAATT
TGAGTTTTGAGGGCATTGGTGTTTATTCAGATTATTTTTATTTTGTAGCA
TGTAAAATATTAGTTAAAAGATTAAATTTTTGCTAGTTATACCAACTATC
CCAACTTATGATTACACTGAAGTTAGTAATGAAAACATGACAAGGCCTTT
CTTGAGAAGACATGTAGGTCGGGCATCTGGATGAGACTATNAAGCAGGCA
GTTTCTTTCTATGACATTTAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTGATATTTACCTAAAGGAGTTTAAAGTTTAT
GTCAAAACAGAAAGCTATAATCACTAATAATTAACACAACTTGGAAGCAA
CCAAGATGCCTTTCCATCGATGAGTGGAAAAGCTGAAACATTCAGGGCAT
GAAATATTATTTAATACCAAAAAGAAATGAACTGCAAAGTCACAGAAAGA
CACAGAAGAAACTACAATGTATATTTACAGGTGGAAGAAAATGCAATGTG
TGTATAAGCAACCAACTCCAACTATAGGACACTCAGTGTGTATGGACAGA
GGAATAGACATAGCCCAGGATTTGGGTCGTGAAAATGCTCTGCTTGATAC
TGTAATATCAGACACATATTATTGCACATTTGTTCAGAGCAATAGAATGT
GTAACATTAAGCATGGATGGTAACATCATCGACAGACTTTGGGTGGTGAG
GTATCCTTCTATGCTCATCACTTGCACATATGCAGTGCAACAGAGGAAGG
CAAGGACAAGCAGGAGACCTTGGCAGGTGTCAGGGCAGAGAATGTATTGG
AAATCTCTGCTTTCTCCCACGGGTGATGTGACCCTACAACATGAAACGAC
CTTTAACTTTTTTTAAGTTCATTTAAAAAATATAATAGCTATCCTGCAAA
TTCATCAGCTGTACTGTAAAAAGATGGCTTCTGGGCTCTCTGCCACCCCA
AGAGACATAACACAGCGGTTTTAA

Query= MSMg01no514_a23.b1 MSMg01no514_a23.b1 CHROMAT_FILE:
MSMg01no514_a23.b1 PHD_FILE: MSMg01no514_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:48 2005
         (559 letters)



>mm_chr5_3967540_3968499
          Length = 960

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%), Gaps = 1/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagttgagtctgatacatgctggactgctgacgagcagagcctttactcatttg 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattccagttgagtctgatacatgctggaccgctgacgagcagagcctttactcatttg 264

                                                                       
Query: 65  tctcaggtggatgtatgtaatcatttactaccttttgattaaaggacccaggcttatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcaggtggatgtatgtaatcatttactaccttttgattaaaggacccaggcttatgaa 324

                                                                       
Query: 125 aatccatttgggctccgcaaaggaaaacggtccagttgtagattgttcatttatactaca 184
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 aatccagttgggctccgcaaaggaaaacggtccagttgtggattgttcatttatactaca 384

                                                                       
Query: 185 ctatagtcaaaataaattaacctgtcacatatgtggattaatttcagaagcattttttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctatagtcaaaataaattaacctgtcacatatgtggattaatttcagaagcattttttga 444

                                                                       
Query: 245 tgttttgatatttgatactaaaatgcaaagaaatttgcaaaataaatgcctctgtgtcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttttgatatttgatactaaaatgcaaagaaatttgcaaaataaatgcctctgtgtcaa 504

                                                                       
Query: 305 tacacagaaatatacaatataatgcaatgtttacatgttcactgggaaatgatagtaaac 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 tacacagaaatatacaatataatgtaatgtttacatgttcactgggaaatgatagtaaac 564

                                                                       
Query: 365 accttccagatttttggtaacagttcctagtgggcaaggaataattaaacattatgaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accttccagatttttggtaacagttcctagtgggcaaggaataattaaacattatgaatt 624

                                                                       
Query: 425 aaatcttgtctctaatgttttgtttctaaatctaaggagctgtagatggaataggagaaa 484
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatcttgtctctaatgttttctttctaaatctaaggagctgtagatggaataggagaaa 684

                                                                       
Query: 485 aaaaa-tgacagcattgagaattattaatttgagttttgagggcattggtgtttattcag 543
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaaaatgacagcattgagaattattaatttgagttttgagggcattggtgtttattcag 744

                           
Query: 544 attatttttattttgt 559
           ||||||||||||||||
Sbjct: 745 attatttttattttgt 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space:   521550
Effective search space used:   521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)