BAC Information

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BAC

Clone NameMSMg01-514K23
Chromosome5 (Build37)
Map Location 49,243,265 - 49,243,460
singlet/doubletsinglet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514K23.T7 (MSMg01no514_k23.b1)MSMg01-514K23.TJ (MSMg01no514_k23.g1)
ACCAG587110AG587111
length751752
length of high quality
(start - end)		564 (44 - 607)556 (74 - 629)
definitionCHROMAT_FILE: MSMg01no514_k23.b1 PHD_FILE: MSMg01no514_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:40 2005CHROMAT_FILE: MSMg01no514_k23.g1 PHD_FILE: MSMg01no514_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGTTTATCTCTGTATTCCATTTTTAAAAATTAGGTTATTTGGTTT
GTTGGAGTCTAGCTTCTTGAGTTCTTATATATTTGATATGTTAGCCCTAT
GTCATATGTAAGGTTAGTGAAGATCTCTTCCCAATGTGTAGGCTGCCATT
TTGTCCTATCGACAGTATCCTTTGCCTTACAGAAGCTTTTCAGTTTCATT
AAGTCCCATTTATCAATTGTTGATCTTACAGTCTGAGCCAATGGTATTGT
GTTCAGAAAACTGTCTTTTGTACCAATGTGTTCAAGACAATTTCCTCCTT
TCTCTTCTATTAGATTCAGTGTATCTGGTTTTATGTTGAGGGTTTTGATC
CACTTGGATTTGGGTTTTGTGACAAAAACAAAAAAGGGGGAATCGCTGAT
GGCCGGCCACCCAAAGAACAATTATCTTTAGCCCTATTTGCTTTAAATTT
TTTAATTCTAGACGAACATGGTCGTTTGGCTACAGATAGGCATGCCATGA
CCTTGCCTATCCTTAAACAGGATGTCAAATGGAAAGATGTCCTAACTGGA
AAATGGTATGGCCCAGATCCCGTTATTTCGAGATCCAGGAGAGCTGTTTG
TGTTTTTCACAAGGTCAAGAACACCTGATTTGGGTACCATAGAGGCTGTC
GCAAAAATTGCTCCCCCTGACAGAGATATAGATTGTAATAGTTCTGGAAA
A

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGGAGTCTTTTTCTAATCAGTTCAG
TGAATGTGGCACATTTTAAACCTGAGTCTTACTTAGATTTTTCCTTCTGA
AAACCTTGTTAATACACATTTCTATCAAAGCTGTTTGTTAAGATGCAATG
TAATATTATATTTCTACCTTATTTCTTCCTGTCATATAGTAAGTCCCCTA
AGGAAAATGACATATAAATATACTGTTCTATAGACAAAATAACTGTGTCA
GCAGCACCAAAATATTACTTATTTTGTGAATTCTATGGGGATGTGAATAT
TTTAAACAGCTAATTGACAGATCCCATAGAAGCCAGGAAGAGGACAGGTA
ATTTGATTTTGATTAATAAAGGAATCAAAAATAATTTATTAGTTGTATCT
GTGATGGTTACTTTTATCAGCTTGATAAAATCTAGAAACAGTTAGAAAGA
AAGTCTCAATGGGTTATTACCTAAATCAAGTTGGCCTTAGGTCTATTGGG
GATTGTCTTGAATTCTTAACATGATGTTGGAAAACACAGCCTAAAGGTGG
ATTGCATCATGACCTAGGTTTATGCCCCAATTATGTNAAAGAGCATATTA
TGAGCCAAGCAATATAATACAAAATTCATTCTTTCTCTGNTCTAGACTAT
GGATGTGATGAACTGATTGAAAGTCTTGCTACCTTAATTCACTTCACTGG
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_k23.g1 MSMg01no514_k23.g1 CHROMAT_FILE:
MSMg01no514_k23.g1 PHD_FILE: MSMg01no514_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:40 2005
         (556 letters)



>mm_chr5_49243265_49244224
          Length = 960

 Score =  356 bits (184), Expect = e-102
 Identities = 193/196 (98%), Gaps = 1/196 (0%)
 Strand = Plus / Minus

                                                                       
Query: 326 taatttgattttgattaataaaggaatcaaaaataatttattagttgtatctgtgatggt 385
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 196 taatttgattttgattaataaaggaagcaaaaataatttattagttgtatctgtgatggt 137

                                                                       
Query: 386 tacttttatcagcttgat-aaaatctagaaacagttagaaagaaagtctcaatgggttat 444
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tacttttatcagcttgataaaaatctagaaacagttagaaagaaagtctcaatgggttat 77

                                                                       
Query: 445 tacctaaatcaagttggccttaggtctattggggattgtcttgaattcttaacatgatgt 504
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 76  tacctaaatcaagttggccttaggtctactggggattgtcttgaattcttaacatgatgt 17

                           
Query: 505 tggaaaacacagccta 520
           ||||||||||||||||
Sbjct: 16  tggaaaacacagccta 1



 Score =  203 bits (105), Expect = 2e-56
 Identities = 132/143 (92%), Gaps = 6/143 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggagtctttttcta---atcagttcagtgaatgtggcacattttaaacctgagtctt 57
           ||||||| | |||||||   |||||||||||||||| |||||||||||| || |||||||
Sbjct: 342 aatggag-ccttttctacttatcagttcagtgaatgaggcacattttaaccccgagtctt 284

                                                                       
Query: 58  acttaga--tttttccttctgaaaaccttgttaatacacatttctatcaaagctgtttgt 115
           |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 283 acttagatttttttccttctgaaaaccttgttaatacacatttctatcaaaactgtttgt 224

                                  
Query: 116 taagatgcaatgtaatattatat 138
           |||||||||||||||||||||||
Sbjct: 223 taagatgcaatgtaatattatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 556
Length of database: 960
Length adjustment: 10
Effective length of query: 546
Effective length of database: 950
Effective search space:   518700
Effective search space used:   518700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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