Query= MSMg01no514_n06.b1 MSMg01no514_n06.b1 CHROMAT_FILE:
MSMg01no514_n06.b1 PHD_FILE: MSMg01no514_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:52 2005
(682 letters)
>mm_chr5_63673824_63674903
Length = 1080
Score = 1263 bits (653), Expect = 0.0
Identities = 672/679 (98%), Gaps = 2/679 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttattcttctaatacttgtagataataggtaatgttataagtaccttgaaaa 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattctttattcttctaatacttgtagataataggtaatgttacaagtaccttgaaaa 263
Query: 64 tgtttgtgttctgtcaagagtgttgctgaaacagtctacatgccctgtatcttcctgaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtttgtgttctgtcaagagtgttgctgaaacagtctacatgccctgtatcttcctgaca 323
Query: 124 ttttcaattcagtttgaaacttgttttttcacatttaccattttctactcataaatctat 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 324 ttttcaattcagtttgaaacttgttttttcacgtttaccattttctactcataaatccat 383
Query: 184 agagttttaaggacatcttaacaattagatatatataaatgattcaacctatcttcttat 243
|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 384 agagttttaaggacatcttaacaattag--atatataaatgtttcagcctatcttcttat 441
Query: 244 attctagctctttaagcctaagttttcttacttatatatgtatttagggtatgatctcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attctagctctttaagcctaagttttcttacttatatatgtatttagggtatgatctcct 501
Query: 304 tatatctacatatccttacagcagttgtagctttattttctatatttttaattttacatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tatatctacatatccttacagcagttgtagctttattttctatatttttaattttacatt 561
Query: 364 tatgcatttctctttaattttacatactttcagttaatgtcatcaggaggaagatctaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatgcatttctctttaattttacatactttcagttaatgtcatcaggaggaagatctaat 621
Query: 424 ttcatccttttccatagcattctaccagatacccaaaatcatttctttaaaagtcactag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttcatccttttccatagcattctaccagatacccaaaatcatttctttaaaagtcactag 681
Query: 484 agcccacctaccttcgctctagtgactcagtatccatcacttagatagatacttttacaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agcccacctaccttcgctctagtgactcagtatccatcacttagatagatacttttacaa 741
Query: 544 atgcaggtgggtgcacttctgttctttctgatgcatttcattggtctccctatttttcaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atgcaggtgggtgcacttctgttctttctgatgcatttcattggtctccctatttttcaa 801
Query: 604 caagtataattaaaagaaaagtggtcttttattttgattacacacactccatatctcatt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caagtataattaaaagaaaagtggtcttttattttgattacacacactccatatctcatt 861
Query: 664 tactattggtataacttgt 682
|||||||||||||||||||
Sbjct: 862 tactattggtataacttgt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1080
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1070
Effective search space: 719040
Effective search space used: 719040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_n06.g1 MSMg01no514_n06.g1 CHROMAT_FILE:
MSMg01no514_n06.g1 PHD_FILE: MSMg01no514_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:52 2005
(512 letters)
>mm_chr5_63819097_63820010
Length = 914
Score = 864 bits (447), Expect = 0.0
Identities = 464/471 (98%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 1 ctaattagtcagccaggttctctaggcacagcttttctagaagagttctcatccacagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctaattagtcagccaggttctctaggcacagcttttctagaagagttctcatccacagat 410
Query: 61 caggttagaaacacacacacaca--tacactaaaagtatggaagacttgtaaaagcttta 118
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 409 caggttagaaacacacacacacacgtacactaaaagtatggaagacttgtaaaagcttta 350
Query: 119 ctgataaattcaaatgctgtacttcaggacgactggaggctgcaatcatttgtatgagtt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctgataaattcaaatgctgtacttcaggacgactggaggctgcaatcatttgtatgagtt 290
Query: 179 ctgaggtgatgacaagtttatatggatttgcataaagaaatttttggaatgctcatatta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctgaggtgatgacaagtttatatggatttgcataaagaaatttttggaatgctcatatta 230
Query: 239 ataatcatatatgtaaatggaaattcacaatgggaggagaggctcttaaggcccaaccca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ataatcatatatgtaaatggaaattcacaatgggaggagaggctcttaaggcccaaccca 170
Query: 299 actgaaaagctattggcagttgataactgcagagagaaggacagttagttttctttaggg 358
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 169 actgaaaagctattggcagtttcta--tgcagagagaaggacagttagttttctttaggg 112
Query: 359 gtgtagctgctggcaggtttcccatgccccaatagatgacctcatgcccataagcatata 418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 111 gtgtagctgctggcaggtttcccatgacccaatagatgacctcatgcccataagcatata 52
Query: 419 ggcagcattaattggattcagtagtgtaaaaaataaaaccaaaattataag 469
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 ggcagcattaattggattcagtagtgtaaaaaataaaaccaaaattataag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space: 453808
Effective search space used: 453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
