Query= MSMg01no515_i08.b1 MSMg01no515_i08.b1 CHROMAT_FILE:
MSMg01no515_i08.b1 PHD_FILE: MSMg01no515_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:52 2005
(659 letters)
>mm_chr5_71437723_71438785
Length = 1063
Score = 466 bits (241), Expect = e-135
Identities = 315/357 (88%), Gaps = 32/357 (8%)
Strand = Plus / Minus
Query: 334 gaaggacacatgctccactatgttcatacctattttcttgcttattttttccctgtttt- 392
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1063 gaaggacacatgctccactatgttcataccttttttcttgcttatttttcccctgttttg 1004
Query: 393 --------------------ttt-tttgattttgaaagcagggttcctctgagtatgtag 431
||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1003 tttgtttgtttgtttgtttgtttgtttgtttttgaaagcagggttcctctgagtatgtag 944
Query: 432 cctaaa----ttagaacttgctctgtagactagggtggctttgagctcacgaagatcaac 487
|||||| ||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 943 cctaaatgtcttagaacttgctctgtaaaccaggctggctttgagctcacgaagatcaac 884
Query: 488 ctatatctgcatcctgaatgtatttttaaattttgaatccactttatacctttttgttgc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ctatatctgcatcctgaatgtatttttaaattttgaatccactttatacctttttgttgc 824
Query: 548 ctacttgctaaagataagatttttttagcac----tcaatgagattgtgcagtgggcatc 603
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 823 ctacttgctaaagataaga-ttttttagcactcaatcaatgagattgtgcagtgggcatc 765
Query: 604 gtgtctgcttcctaatttca-agctagctttgctagcttttattcatgggttttaat 659
||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 764 atgtctgcttcctaatttcataggaagctttgctagcttgtattcatgggttttaat 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1063
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1053
Effective search space: 683397
Effective search space used: 683397
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_i08.g1 MSMg01no515_i08.g1 CHROMAT_FILE:
MSMg01no515_i08.g1 PHD_FILE: MSMg01no515_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:52 2005
(670 letters)
>mm_chr5_71363588_71364658
Length = 1071
Score = 1222 bits (632), Expect = 0.0
Identities = 662/672 (98%), Gaps = 3/672 (0%)
Strand = Plus / Plus
Query: 1 caaatcaaaccacaataaagatgttccaaatttatggaaaaattttataatatagtgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatcaaaccacaataaagatgttccaaatttatggaaaaattttataatatagtgttc 260
Query: 61 aatgatactttccaaatataaaagtttctttcagtatttgaaatatttatatcacataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgatactttccaaatataaaagtttctttcagtatttgaaatatttatatcacataaa 320
Query: 121 aatatgtacaaagttgtttcttaaggcgtatatcaattgataaaactggacagcaaggca 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gatatgtacaaagttgtttcttaaggcatatatcaattgataaaactggacagcaaggca 380
Query: 181 ccagtttatctatgcacaaatgtctcgttagcctcagtacttgaagtacg-aaaaatatg 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ccagtttatctatgcacaaatgtctcgttagcctcagtacttgaagtacgaaaaaatatg 440
Query: 240 tatcaacaatcaaaaggattaatattaaag-tggatttccccaattagaacatatgacca 298
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 441 tatcaataatcaaaaggattaatattaaagttgg-tttccccaattagaacatatgacca 499
Query: 299 aattaacatccttagatatttcagtatttacacgctcatttcatattacatgaaagagga 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aattaacatccttggatatttcagtatttacacgctcatttcatattacatgaaagagga 559
Query: 359 aaatcctaccttcacctttacaacatagtaatagagatatagatacatgacgagccattg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatcctaccttcacctttacaacatagtaatagagatatagatacatgacgagccattg 619
Query: 419 agccattgacatagccatgaagtcttcactaggtaaaattaatgcacaaagttctttcat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agccattgacatagccatgaagtcttcactaggtaaaattaatgcacaaagttctttcat 679
Query: 479 aatatatttttggtgatctaaagacatgagctttctcagcagacagaactaggatccagt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatatatttttggtgatctaaagacatgagctttctcagcagacagaactaggatccagt 739
Query: 539 aagcttgttggtcagttgtataagctggaacaagttaacacctttgataaacttaagatt 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagcttgctggtcagttgtataagctggaacaagttaacacctttgataaacttaagatt 799
Query: 599 atttgctgtggaagattagaattaagaagaggccctccttactgcagagattgagggagg 658
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 800 atttgttgtggaagattagaattaagaagaggccctccttactgaagagattgagggagg 859
Query: 659 acatgtgtgaac 670
||||||||||||
Sbjct: 860 acatgtgtgaac 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
