Query= MSMg01no515_i09.b1 MSMg01no515_i09.b1 CHROMAT_FILE:
MSMg01no515_i09.b1 PHD_FILE: MSMg01no515_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:52 2005
(604 letters)
>mm_chr5_32058945_32059947
Length = 1003
Score = 1112 bits (575), Expect = 0.0
Identities = 596/603 (98%), Gaps = 1/603 (0%)
Strand = Plus / Minus
Query: 1 ctcacaaccatctgttactccagtttcagaggatcaatgccctcattgatctctatgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ctcacaaccatctgttactccagtttcagaggatcaatgccctcattgatctctatgaat 871
Query: 61 atgaggcatgcctatggcacacatctatacatgtaggcaaaactctcatacatataaaaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 870 atgaggcatgcctatggcacacatctatacatgtacgcaaaactctcatacatataaaaa 811
Query: 121 taaagtaattaataaatctttaagaaaagaacaaatactggtgagaatgtagcagaaaga 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 810 taaagtaattaataaatctttaagaaaagaacaaatactggtgagactgtagcagaaaga 751
Query: 181 aactctaaaaatgtaaagtaataaaaaaaaagtagtaattaaaagaaatggtgagataga 240
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 750 aactctaaaaatgtaaagtaat-aaaaaaaagtagtaattaaaaaaaatggtgagataga 692
Query: 241 ggtgttgagatacacttcaacaccagaatacagcaggtttctcttacaaggacagagact 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggtgttgcgatacacttcaacaccagaatacagcaggtttctcttacaaggacagagact 632
Query: 301 atcttctgactacaactgataaaggaaatacttgatttattatagttaacctgtaataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atcttctgactacaactgataaaggaaatacttgatttattatagttaacctgtaataaa 572
Query: 361 agcatccttcttttcatctagtaatagtatcttaatgaagctctataacatgtcttcata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agcatccttcttttcatctagtaatagtatcttaatgaagctctataacatgtcttcata 512
Query: 421 aaatataaattagaagtctttagaaatgaaggaaatgtctcatttctctaaaggaaaact 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaatataaattagaagtctttagcaatgaaggaaatgtctcatttctctaaaggaaaact 452
Query: 481 gtcctaagacttggtgattttccaggattgcatttagacatggataaatcacttgaatgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtcctaagacttggtgattttccaggattgcatttagacatggataaatcacttgaatgc 392
Query: 541 agctagtgaccagaatgctgtatatcacagaacaattcttagttttacataagtaattct 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agcaagtgaccagaatgctgtatatcacagaacaattcttagttttacataagtaattct 332
Query: 601 gac 603
|||
Sbjct: 331 gac 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_i09.g1 MSMg01no515_i09.g1 CHROMAT_FILE:
MSMg01no515_i09.g1 PHD_FILE: MSMg01no515_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:52 2005
(618 letters)
>mm_chr5_31923236_31924253
Length = 1018
Score = 1152 bits (596), Expect = 0.0
Identities = 615/622 (98%), Gaps = 4/622 (0%)
Strand = Plus / Plus
Query: 1 ctgcttctgaactggaagtaggatggaggtgagaaatgcagagtatttaatgtttttt-c 59
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 197 ctgctgctgaactggaagtaggatggaggtgagaaatgcagagtatttaatgtttttttc 256
Query: 60 tttcattatttattagtaagggtgaattggctgtgtctgtgtaacacaagtgtgcctggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttcattatttattagtaagggtgaattggctgtgtctgtgtaacacaagtgtgcctggt 316
Query: 120 gcttgcagaggatgtcagattccctggaacttgagttgtaggtgctgtgaaccaaacctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcttgcagaggatgtcagattccctggaacttgagttgtaggtgctgtgaaccaaacctg 376
Query: 180 ggtctttttgaaaggcaaccagtgctcttaactagccatcttttcagcccacagcagtat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggtctttttgaaaggcaaccagtgctcttaactagccatcttttcagcccacagcagtat 436
Query: 240 attttaaataagcttcttagctaattctttttttttt--aaacactatat-tttttttaa 296
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 437 attttaaataagcttcttagctaattcttttttttttttaaacactatatatttttttaa 496
Query: 297 agatttatttatttattatatgtaagtacattgtagctgtcttcagacactccagaagag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agatttatttatttattatatgtaagtacattgtagctgtcttcagacactccagaagag 556
Query: 357 ggagtcagatctcgttagggatggttgtgagccgccatgtggttgctgggatttgaactc 416
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 ggagtcagatctcgttagggatggttgtgagccaccatgtggttgctgggatttgaactc 616
Query: 417 tggaccttcagaagagcagtcgggtgctctaacccactgagccatctcaccagccctagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tggaccttcagaagagcagtcgggtgctctaacccactgagccatctcaccagccctagc 676
Query: 477 taattaattcttaatcatggcttggaaatttaatgtggggtgtatccattttcattgtag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taattaattcttaatcatggcttggaaatttaatgtggggtgtatccattttcattgtag 736
Query: 537 aagagaacacaaagctgaagtgtgttcagtcaggagctatgagatcacacagtcctttgg 596
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 737 aagagaacacaaagctgaagtgtgttcagtcaggagctatgaggtcacacagtcctttgg 796
Query: 597 cctcccagctttcctttgggtg 618
||||||||||||||||||||||
Sbjct: 797 cctcccagctttcctttgggtg 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
