Query= MSMg01no515_j24.b1 MSMg01no515_j24.b1 CHROMAT_FILE:
MSMg01no515_j24.b1 PHD_FILE: MSMg01no515_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:01 2005
(606 letters)
>mm_chr5_55133634_55134639
Length = 1006
Score = 1098 bits (568), Expect = 0.0
Identities = 591/602 (98%), Gaps = 7/602 (1%)
Strand = Plus / Plus
Query: 12 gaattctcggacagacagaagcgttgtctgcagttacttatccactgctaaaagcactag 71
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggacagacagaggcgttgtctgcagttacttatccactgctaaaagcactag 264
Query: 72 tctccgagagatagctcacacagacagaagcaaaaagcaaagagaagacatcaacttgag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctccgagagatagctcacacagacagaagcaaaaagcaaagagaagacatcaacttgag 324
Query: 132 aaagtgctttttagatagaaggttggatagacaggcataatagagattgaaagaaggtag 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagtgctttttagatagaaggttggatagacaggcataatagagattgaaagaaggtag 384
Query: 192 gtgtgagtggtcagtattcattatgtaccagagcgacacttgtcaaatttaatttacctg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtgagtggtcagtattcattatgtaccagagcgacacttgtcaaatttaatttacctg 444
Query: 252 aaattggtggaaaattaattgtgtttatggccacaaataacctatctgaaaagcaataat 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaattggtggaaaattaattgtgtttatggccacaaataacctatctgaaaagcaataat 504
Query: 312 gataactatgcatttctc--gagggataaatttagtcaatgaaatg-----cacagctta 364
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 505 gataactatgcatttctcaagagggataaatttagtcaatgaaatgaaatgcacagctta 564
Query: 365 taaagtgaaaaatggaaaacattgatgaaagaaattaaaccagtaaccttgtaaggcagg 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaactgaaaaatggaaaacattgatgaaagaaattaaaccagtaaccttgtaaggcagg 624
Query: 425 tggcagaacaactgtgctaagaaagtagagcatacacactgactgtagaaaagttgaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggcagaacaactgtgctaagaaagtagagcatacacactgactgtagaaaagttgaaga 684
Query: 485 ttggggagagaaggagatagataaactgaggatgtataaagatatcatagggcaacccag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttggggagagaaggagatagataaactgaggatgtataaagatatcatagggcaacccag 744
Query: 545 tatttattagctaactaaaagcggaagtacccagagaaaacagtattggaatggaggtac 604
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tacttattagctaactaaaagcggaagtacccagagaaaacagtattggaatggaggtac 804
Query: 605 tg 606
||
Sbjct: 805 tg 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_j24.g1 MSMg01no515_j24.g1 CHROMAT_FILE:
MSMg01no515_j24.g1 PHD_FILE: MSMg01no515_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:01 2005
(574 letters)
>mm_chr5_55187188_55188161
Length = 974
Score = 1048 bits (542), Expect = 0.0
Identities = 566/574 (98%), Gaps = 2/574 (0%)
Strand = Plus / Minus
Query: 1 ttcttctttcagttaattttggtgaaaataactaaaattcctccagggcaataatacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 ttcttctttcagttaattttggtgaaaataactaaaattcctccagggcaataatacttg 869
Query: 61 acagactattcaatcacactagacaatccaaacactgtataatcccatcttttattcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 acagactattcaatcacactagacaatccaaacactgtataatcccatcttttattcaga 809
Query: 121 gaagttctcccctatttaaaatatatatatataatggcagtacatacatttcccttttgc 180
|||||||||||||| |||||| | | |||||||| ||||||||||||||||||||||||
Sbjct: 808 gaagttctcccctacttaaaa-a-aaatatataacagcagtacatacatttcccttttgc 751
Query: 181 cacttttaactataattttttttgaagtctactagttcactctgaagcattctgtagatg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 750 cacttttaactataattttttttgaagtctactagttcactctgaagctttctgtagatg 691
Query: 241 tgcccacactgaattccacatttctaaactcctcaggaacagccctagactcctaagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgcccacactgaattccacatttctaaactcctcaggaacagccctagactcctaagttc 631
Query: 301 tattagctttattctacccattctgcagtggatatttgctgtttgttatgcactgcattg 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 630 tattagctttattctacccattccgcagtggatatttgctgtttgttatgcactgcattg 571
Query: 361 cctaggctcgcagcatccagcctttacttccgtgtgcctgcattgctcgtgtttggagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cctaggctcgcagcatccagcctttacttccgtgtgcctgcattgctcgtgtttggagct 511
Query: 421 agagaatgctaagagaattgaatttctgcgatcaggctgctctctctctcggtggaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agagaatgctaagagaattgaatttctgcgatcaggctgctctctctctcggtggaggaa 451
Query: 481 aaataaaacatagggagagtgaattatgagagaaggcaggaaggaaggtgtgtggaaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaataaaacatagggagagtgaattatgagagaaggcaggaaggaaggtgtgtggaaatt 391
Query: 541 caggtcagacataactgcagcttcccctagccca 574
||||||||||||||||||||||||||||||||||
Sbjct: 390 caggtcagacataactgcagcttcccctagccca 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
