NCCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTGCAGATTCGTGGGAAGGACAAAAACCTTACAGAGGTGTTAG
ACCATTCTTCTGCATTTAGACAAAGTCAAAAGCAACTGAGGGAATTATGG
AAAAGTTACAAATGCCTTAGAAATCGTCAAGGAAAATAATTTTTTTGCCC
TCCGCAGGAACTTTCAAATGCAGCCTCTATAAAGCATCATTAAACCTGCA
TGGGCCTAATGAGGTAAGTCCACATCATCCAGTTATTAAACAAACAAAAA
GGTCTGCTCTCATTTCCCAGAGAGCTCTCCAACCTACATACCTTCTTTAT
GAGCTCAAATTACGGAATTAAATATTCTGACATCTGTACCAATGTGTATT
CCATTCCTTAATTGACAGAGTTGAGGACAGAGGAAGCAAGAAAGGGGTAT
GCTAATTATTCTTTTTTCTCATCAGCAACTACTCAGTAATGCTGTTTTTA
TAAAGAGGACATGAAATAGAAACAGATTACATGATTCTCAGCCCTTACTA
GGATTAAGTGATAGTAGGAAAAATGGTTTATCGGGAACNGACTATTAGGA
AAAGGCAAAATTACTTAATGAATGGTGAAATTTTCTGAAATATTTACCAA
ATTTTTTGGAAAAGGGCCCCATAAAAAACTGGGGTTCCCAAAATTTACTT
GGGGAAAAGGGGCCCCCAAAATAAAAGAATACCCGCCCCC

NNNCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGG
CAGAGAAATACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACACTGAGATTCCACTTCCCAGTCAGAATGGCTAAGAT
CAAAAGCTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAAAAAGAGGAA
CACTCCTCCATTGCTGGTGGGATTGAAGGCTGGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAAGATAA
AGGAATTCCTCTCCTGGGCATATACCCAGAAGATGTCCCAACTGGTATGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAACAGCCAGA
AACTAGAAAGAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAAT
TTTTGAAGTTCTTAGGCAAATGGATGTATTTGGGGGCTATCATCCTGAGT
GAAGTACCCAATCATAAAAGAACACACATGATATGCACTCATTGATAAGT
GAATATTAGCTCAGAAACTTAGAATACCCAAAATTTCATTTGCAAAACAC
ATGAAACTCATGATGAAGGAAGACAAAGTGTGGATACTTTGTTTTCTTAN
AATGGGGAGCAAAATACCATGGNAAGAG

Query= MSMg01no515_n14.b1 MSMg01no515_n14.b1 CHROMAT_FILE:
MSMg01no515_n14.b1 PHD_FILE: MSMg01no515_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:20 2005
         (508 letters)



>mm_chr5_42847582_42848489
          Length = 908

 Score =  959 bits (496), Expect = 0.0
 Identities = 502/504 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgcagattcgtgggaaggacaaaaaccttacagaggtgttagaccattcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcactgcagattcgtgggaaggacaaaaaccttacagaggtgttagaccattcttc 649

                                                                       
Query: 65  tgcatttagacaaagtcaaaagcaactgagggaattatggaaaagttacaaatgccttag 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 648 tgcatttagacaaagtcaaaagcaactgaggcaattatggaaaagttacaaatgccttag 589

                                                                       
Query: 125 aaatcgtcaaggaaaataatttttttgccctccgcaggaactttcaaatgcagcctctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaatcgtcaaggaaaataatttttttgccctccgcaggaactttcaaatgcagcctctat 529

                                                                       
Query: 185 aaagcatcattaaacctgcatgggcctaatgaggtaagtccacatcatccagttattaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaagcatcattaaacctgcatgggcctaatgaggtaagtccacatcatccagttattaaa 469

                                                                       
Query: 245 caaacaaaaaggtctgctctcatttcccagagagctctccaacctacataccttctttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 468 caaacaaaaaggtctgctctcatttcccagagagctctccaacctacatgccttctttat 409

                                                                       
Query: 305 gagctcaaattacggaattaaatattctgacatctgtaccaatgtgtattccattcctta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gagctcaaattacggaattaaatattctgacatctgtaccaatgtgtattccattcctta 349

                                                                       
Query: 365 attgacagagttgaggacagaggaagcaagaaaggggtatgctaattattcttttttctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 attgacagagttgaggacagaggaagcaagaaaggggtatgctaattattcttttttctc 289

                                                                       
Query: 425 atcagcaactactcagtaatgctgtttttataaagaggacatgaaatagaaacagattac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atcagcaactactcagtaatgctgtttttataaagaggacatgaaatagaaacagattac 229

                                   
Query: 485 atgattctcagcccttactaggat 508
           ||||||||||||||||||||||||
Sbjct: 228 atgattctcagcccttactaggat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)