Query= MSMg01no516_a19.b1 MSMg01no516_a19.b1 CHROMAT_FILE:
MSMg01no516_a19.b1 PHD_FILE: MSMg01no516_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(699 letters)
>mm_chr5_34125653_34126751
Length = 1099
Score = 789 bits (408), Expect = 0.0
Identities = 417/420 (99%)
Strand = Plus / Minus
Query: 278 ttgcaattccaccagcaatggaggagtgttcctctttctccacaccctcaccagcatctg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 ttgcaattccaccagcaatggaggagtgttcctctttctccacaccctcaccagcatctg 1040
Query: 338 ctgtcacctgaggttttgatcttatccattctgactggtgtaaggtggaatctcagggtt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 ctgtcacctgaggttttgatcttatccattctgactggtgtaaggtggaatctcagggtt 980
Query: 398 gttttgatttgcatttccctgatgattaaggatgttgaacatttctttaggtgcttctca 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gttttgatttgcatttccctgatgattaaggatgttgaacatttctttaggtgcttctca 920
Query: 458 gccattcggtattcctcagttgtcattactactttggcttggctttgctttcctcctcct 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gccattcggtattcctcagttgtcattactactttggcttggctttgctttcctcctcct 860
Query: 518 cctcctctttggtcaggcaagtgttcttattggtggaagtttctcagcttggctaagaaa 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cctcctctttggtcaggcaagtgttcttattggtggaagtttctcagcttggctaagaaa 800
Query: 578 cttcagttctttggtttaggtcatcagccctttcagggaatacctatacttgacttaatt 637
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 799 cttcagttctttggtttaggtcatcagccctttcagggaatccctacacttgacttaatt 740
Query: 638 ctgtatctgatgcccacaatgtacattaccgtgtgcacaagagaagttccaaacgtctta 697
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 739 ctgtatctgatgcccacaatgtacattaccgtgtgcacaagagaggttccaaacgtctta 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_a19.g1 MSMg01no516_a19.g1 CHROMAT_FILE:
MSMg01no516_a19.g1 PHD_FILE: MSMg01no516_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(679 letters)
>mm_chr5_33984787_33985868
Length = 1082
Score = 1180 bits (610), Expect = 0.0
Identities = 655/686 (95%), Gaps = 27/686 (3%)
Strand = Plus / Plus
Query: 1 acacacacccgaaaatatccttttttggttttttttgtttatttcacctgcagtggtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 acacacacccgaaaatatccttttttggttttttttgtttatttcacctgcagtggtgtt 280
Query: 61 ttgctgcatgtctgtgtgagagtgacagaccctccaaaactggagtaggacaggtgtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgctgcatgtctgtgtgagagtgacagaccctccaaaactggagtaggacaggtgtgag 340
Query: 121 cttcgatgtgaagaattgaacctgggttctctagaactgccagtgctcttaaccactgag 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctgcgatgtgaagaattgaacctgggttctctagaactgccagtgctcttaaccactgag 400
Query: 181 ccatctccaagctccttttttgtttatctatctatctatctatctatctatctatctatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccatctccaagctccttttttgtttatctatctatctatctatctatctatctatctatc 460
Query: 241 tatctatctatctatctatctatctatctatctatctatctatctatccatctatctcta 300
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 461 tatctatctatctatctatctatctatct--------------------atctatctctg 500
Query: 301 actgtcctggaactaattcctggccctataaacattcttgaaaagcaaaagggga---at 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 actgtcctggaactaattcctggccctataaacattcttgaaaagcaaaaggggaatgat 560
Query: 358 gatagagcctcaataccttctaaatcagaacttcaaggtgagcctgtgctaaagttaaga 417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatagagcctcaataccttctaagtcagaacttcaaggtgagcctgtgctaaagttaaga 620
Query: 418 ccctgatcaaaacaccaaaaatatagctaggggtgtggcccagtctgaagaacatttgcc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctgatcaaaacaccaaaaatatagctaggggtgtggcccagtctgaagaacatttgcc 680
Query: 478 tagcatgaatcaaatggggtctacaggccctgaagaaatggtttagtggctaagagcact 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacatgaatcaaatggggtctacaggccctgaagaaatggtttagtggctaagagcact 740
Query: 538 aactgctcttccagatgttctgagttcaagtcctagaaactgaatggtggcttatagcca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactgctcttccagatgttctgagttcaagtcctagaaactgaatggtggcttatagcca 800
Query: 598 tctataataggatccaataccttcgttgtgcaggtatatatgcaaagcacccatatgtaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctataataggatccaataccttcgttgtgcaggtatatatgcaaagcacccatatgtaa 860
Query: 658 aaaatgcataa----gaataaaacag 679
||||||||||| |||||||||||
Sbjct: 861 aaaatgcataaataagaataaaacag 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1082
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1072
Effective search space: 717168
Effective search space used: 717168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
