BAC Information

Click to search

BAC

Clone NameMSMg01-516B15
Chromosome5 (Build37)
Map Location 123,878,992 - 123,879,459
singlet/doubletsinglet
Overlap geneMlxip
Upstream geneAnapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
Downstream geneLOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516B15.T7 (MSMg01no516_b15.b1)MSMg01-516B15.TJ (MSMg01no516_b15.g1)
ACCAG588179AG588180
length742748
length of high quality
(start - end)
552 (74 - 625)518 (82 - 599)
definitionCHROMAT_FILE: MSMg01no516_b15.b1 PHD_FILE: MSMg01no516_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:41 2005CHROMAT_FILE: MSMg01no516_b15.g1 PHD_FILE: MSMg01no516_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTGAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGGCGATACATAACAGTAGTAATGACCCTGTCCAAAGC
ATAGCAAAACCCTGCAGCATCTGAGAACACTTTTCCCTGGGGCTGCTTCA
CTACTATCGCAGACCAGACCTTTCACCTCCAGTCCTTCCAGTTACGTGCT
TCCCCGAAGTTTGGAATTGATAGCCCTTGCTCCAAAGCCTCTATGGAAAT
CATTTAGTTTGTCCTGTGGCTAAAGCCTCAGGCAAACACAGCACTCACAT
AAACCAGAATATTCCAAGACTCAGGATTCACTGCCCAGAAGCCCAACTCC
TCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCCTCCCTC
TCTTCTCTCTCCTCCCCTCCCCTCCTCTTCTCTCTCTCCTTGTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTTCTTTCTTTCGTTCTTTCTTTCTTTCTTTCTCTTTCTTTC
TTTCTTTCTTTCTTTCGACTGGATCTTGCTGTAGCTTAGGCTATTTGAGA
ACTCACTGTGTAACCCAGGCTGTCTTTGAACTTAGACGATCCTTCTGGCC
CTGACTTCTCTAAAATTGGAACAAGTTATTTCTTTTTATTTG
NCCTTCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTAGCCTGAGCCACA
TAGGGAGGCCCTGTTTCAAAAGAAAGGTTATTCTTTTAGGGGAGCTGGAG
AGATGGCGCTGAGGTTAGGGCCCTTGTTGCTCTTGCAGAGGACCTGGGTT
CAGTTCCCAGAACCCATATGGCAATTTGTGACCATGTATGACTCTAGTCC
CAGGGAATCTAACACCCTCTTTTGACTTTCTCAGGTACCAAGAACACACA
TAGTGTACATACATACATGCAGGCAAAACACCATACATAAAAAAATTATG
AATCTGAAAAAAATTTCAAGAAAAAAACAGGAATTTTTTTTTTTAATTTA
ATTTGAGCATAAGGACTTGAGAGATGGCTCAGCGGTTAAGAGCACTGACT
GCTCTTCCAGAGGTCCTGAGTTCAAATCCTAGCAACCACATGGAGGTTTA
CAACCATCTATAAAGGGATCTGATACCCTCTTCTGGCCTAGTGACAGTGA
ACTCACATTTTATAAAATAAATAAATAAACCTTAAAAAAATTGAGCATTA
GTTACTTCATTCCCGTTTGAGGGACTGTTTGTTCTGTTTGTTTTGATGAA
TTGTAAATTTCTTAATTCTTTTTTCTTTATGGGATCAAGCCCCAGAGAAT
GGGAGAGATTGATTTAAAAAAAATAGATTTATCTTATATAATAAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_b15.b1 MSMg01no516_b15.b1 CHROMAT_FILE:
MSMg01no516_b15.b1 PHD_FILE: MSMg01no516_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:41 2005
         (552 letters)



>mm_chr5_123878792_123879743
          Length = 952

 Score =  808 bits (418), Expect = 0.0
 Identities = 448/468 (95%), Gaps = 17/468 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagtagtaatgaccctgtccaaagcatagcaaaaccctgcagcatctgagaacacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagtagtaatgaccctgtccaaagcatagcaaaaccctgcagcatctgagaacacttt 260

                                                                       
Query: 61  tccctggggctgcttcactactatcgcagaccagacctttcacctccagtccttccagtt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctggggctgcttcactactaccgcagaccagacctttcacctccagtccttccagtt 320

                                                                       
Query: 121 acgtgcttccccgaagtttggaattgatagcccttgctccaaagcctctatggaaatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtgcttccccgaagtttggaattgatagcccttgctccaaagcctctatggaaatcat 380

                                                                       
Query: 181 ttagtttgtcctgtggctaaagcctcaggcaaacacagcactcacataaaccagaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagtttgtcctgtggctaaagcctcaggcaaacacagcactcacataaaccagaatatt 440

                                                                       
Query: 241 ccaagactcaggattcactgcccagaagcccaactcctcctctccctctccctctccctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagactcaggattcactgcccagaagcccaactcctcctctccctctccctctccctc 500

                                                                       
Query: 301 ----tccc-------------tccccctccccctcccctccctctcttctctctcctccc 343
               ||||             |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccgtccccctccccctcccctccccctccccctcccctccctctcttctctctcctccc 560

                                                                       
Query: 344 ctcccctcctcttctctctctccttgtctttctttctttctttctttctttctttctttc 403
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 561 ctcccctcctcttctctctctccttgtctgtctgtctttctttctttctttctttctttc 620

                                                           
Query: 404 tttctttctttctttctttctttctttctttctttctttctttctttc 451
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctttctttctttctttctttctttctttctttctttctttctttc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)