Query= MSMg01no516_h17.b1 MSMg01no516_h17.b1 CHROMAT_FILE:
MSMg01no516_h17.b1 PHD_FILE: MSMg01no516_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(650 letters)
>mm_chr5_102001946_102002996
Length = 1051
Score = 1164 bits (602), Expect = 0.0
Identities = 642/664 (96%), Gaps = 18/664 (2%)
Strand = Plus / Plus
Query: 5 gaattcttcaaagggccccgggggtctgataatcacaataaataccccgagtgtgtcctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaaagggccccgggggtctgataatcacaataaataccccgagtgtgtcctc 264
Query: 65 acacagacctttagttcagaaggctctctagctcgccagttgggttgttatgactgctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacagacctttagttcagaaggctctctagctcgccagttgggttgttatgactgctct 324
Query: 125 gcgcttcacacgggagattgatgaagcctggtggcttccctgaggtcgcccagcgggacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcgcttcacacgggagattgatgaagcctggtggcttccctgaggtcgcccagcgggacg 384
Query: 185 agctccctaccagaaggttccacgctgcctgcagaatcaacgcaattgcaaaacagagct 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctccctaccagaaggttccacactgcctgcagaatcaacgcaattgcaaaacagagct 444
Query: 245 ctgcgcagccaataaaaatatgtcagtgaattttacaaaggagtttttaataaaagagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcgcagccaataaaaatatgtcagtgaattttacaaaggagtttttaataaaagagca 504
Query: 305 aaccccacgtcatgtctgcctcaggcctcttcagtgggccgggctgggtgatattatcgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccccacgtcatgtctgcctcaggcctcttcagtgggccgggctgggtgatattatcgt 564
Query: 365 gggctctaccaactctgaaatcagcagccagctgtggaattaagtttggtaatatttggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggctctaccaactctgaaatcagcagccagctgtggaattaagtttggtaatatttggt 624
Query: 425 agcatggtcacaaatagagtttacattttaaagtcatcgaattttagaaataaaaccgtt 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcatggtcacaaatagcgtttacattttaaagtcatcgaattttagaaataaaaccgtt 684
Query: 485 tgtcatttgtttttt-cgtttgtgtgtgtgggtgcaggggaggctgaagactcat----- 538
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtcatttgtttttttcgtttgtgtgtgtgggtgcaggggaggctgaagactcatgcgtg 744
Query: 539 -------tcatgtatggaggaggtaagaagacagc-gaaaccagtt--ctct--ctttct 586
||||||||| |||||||||||||||||| |||||||||| |||| ||||||
Sbjct: 745 acacagctcatgtatgaaggaggtaagaagacagcagaaaccagttttctctttctttct 804
Query: 587 ttctaccatgtggactgaggctgagactcgggtcctaagtcttggcagcagacaccttcc 646
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttctactatgtggactgaggctgagactcgggtcctaagtcttggcagcagacaccttcc 864
Query: 647 ttgc 650
||||
Sbjct: 865 ttgc 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_h17.g1 MSMg01no516_h17.g1 CHROMAT_FILE:
MSMg01no516_h17.g1 PHD_FILE: MSMg01no516_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(621 letters)
>mm_chr5_102158809_102159830
Length = 1022
Score = 1123 bits (581), Expect = 0.0
Identities = 611/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 1 ttagacctttacgttcagtaaacaatcttatcttagccaaggccattgagcttttcggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttagacctttacgttcagtaaacaatcttatcttagccaaggccattgagcttttcggat 762
Query: 61 agataacagatagtaaataaggccattctctaaggcagaaccagggcatagtttattgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agataacagatagtaaataaggccattctctaaggcagaaccagggcatagtttattgag 702
Query: 121 tacactgtgagagggtacagggtcaggcagcaagcagagagagcaacacttctaggaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tacactgtgagagggtacagggtcaggcagcaagcagagagagcaacacttctaggaaag 642
Query: 181 gctgggcagtctggggagggtggttctaatgggagaagttctttaagagggtgagtttct 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 641 gctgggcagtctggggagggtggttccaatgggagaagttctttaagagggtgagtttct 582
Query: 241 atgcaagagactcccaggatgcagttagtgccatgtgaatgattatggcccagattgcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atgcaagagactcccaggatgcagttagtgccatgtgaatgattatggcccagattgcca 522
Query: 301 ggtaccatcctgcctgagaggctaatgtgagccactgtgcttgtcgtttctctctgtcaa 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggtaccatcctgcatgagaggctaatgtgagccactgtgcttgtcgtttctctctgtcaa 462
Query: 361 acagatcaaagccatgcaaataaaggcagtcctgggcaaagggtcccaaggtatcgggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 461 acagatcaaagccatgcaaataaaggcagtcctgggcaaagggtcccaaggtatctggtc 402
Query: 421 acagctctgtagcgtgcggtcataggattctgtggctcgcagtttggcattcctgaacca 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acagctctgtagcgtgcggccataggattctgtggctcgcagtttggcattcctgaacca 342
Query: 481 tcctcatgaagagtctctgctggggtgccagttccattttatagtctcttagtagtgtcc 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcctcatgaagagtctctgctggagtgccagttccattttatagtctcttagtagtgtcc 282
Query: 541 ttccctttacagctatgtctgtgtacccccataaaacttcctggtt-actcctttacaga 599
||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct: 281 ttctctttacagctatgtttgtgcacccccataaaacttcctggtttactcctttacaga 222
Query: 600 gaatagtccacccccttcaga 620
||||||| |||||||||||||
Sbjct: 221 gaatagttcacccccttcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
