NNNNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCTGTGCTAATACCACTCTGCTCTGTTTTGGTTTCATTTT
GCTGGTTTTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTTGCTTGG
AAGACTTTTAATGACTGCTTGTATTTCATAAAGGGCTATAGGCCTATTTA
AATTGTTTATCTGAATTTGATTTAATTTTGGTGTTACCTATCACAAAATG
GTCAATTTCTTTTAAATTTTCAATTTTGTGGAGTACTGGTTTTTTAAGTA
TGACCTATTGATTCTTTGTGTGTGTGTGTGTGTGTGTGTATGTTCCTTCT
TTGTGGTTTTCTGGTGTGAAAATGCAATTAACTGATTTGTTTTGGAATTT
TCCTTCTACTACTTTCTGTAAGGCTGGATTTGTAGATAGATATTGTTTAA
ACTTGACGTTGTCATGGAATATCTTTTTTTTCCATCAATTGTGATTGAAA
GGTTTCCTGAGTATAGTATTTTGGGCTGGCATCTGTGTTCTCTTAATGTC
TGAAAAACATCTTGCTAGGCTATTCTGACTTTTTAAGTATCCGTTAAGAA
GTCAGTTATAATTCTAATAAGTCTGCCTTTATATATTACTTGGCCTTATT
CTTTTGCAGTTTTTAATATTCCTTGTTCTGTATGTTTCATATTTTGATTA
TTATGTAGGGAGAGTCTTTCTTCTGTTNCATCTATTTGGNGNTGTTTACC
TTGAATCTTTATAGAAAATCA

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACATAGTAAAATGTATT
TATTTTGTGCTGGTTCTATGTAACAAAGATACTGAGCAGCGACCCATCAT
ATGTCAAAACAAAAACAAAAAATCCAGACCCAAATAGAAATATTTTCAAT
TAAAAAAAACCTGAAGAGATAAAAAAAATCAACTTAAAGTATAGCTAAAA
TTGATATTATATATACATCTCCATGATTGCTTTGTTAATTCAAGCCTATG
GCACACAAAAGCTGAAGAAACGTCAATACAACTTAAAGCAGCTTATGAAA
ATAGTTTGATTTGGAGCAATCGTAAGTGTAGTTTTAAATAAGCTTTCCTG
TTTCTGACAAATGACTCAAACAGAACTCTTTATATGTCATTTTCCTTAAC
TGCACTCTTATGTGTTGCTGGGTTTAAGAATACGTCCCATCAAGGCTGAG
CCAATTTCAGAGGACTGCTGTTTAAAGGCTTTTCCTTCTTGCAGACACAA
AGGGGTAACTGCCTGAGAAGTTTTTGTAGGGATCGATTGAGTTTTCTTTA
TCTTTCAAACAAGGCTTTGTACTACGTGTGTTAGGGTGCTTCAGTTCTTG
GAGAAGTTGCAGAAGCTCTTGCCATTTCTTCTCAGGTTCCAACTGATTAA
GCACTGGAAGGATTTAAGCATGATATAGCAACTGTTGTGATGGNATGATT
AGTANGAACAAAGGTTTTTACAGAACAT

Query= MSMg01no516_k19.g1 MSMg01no516_k19.g1 CHROMAT_FILE:
MSMg01no516_k19.g1 PHD_FILE: MSMg01no516_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:30 2005
         (546 letters)



>mm_chr5_6624304_6625251
          Length = 948

 Score = 1036 bits (536), Expect = 0.0
 Identities = 545/548 (99%), Gaps = 2/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatagtaaaatgtatttattttgtgctggttctatgtaacaaagatactgagcagcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatagtaaaatgtatttattttgtgctggttctatgtaacaaagatactgagcagcga 260

                                                                       
Query: 61  cccatcatatgtcaaaacaaaaacaaaaaatccagacccaaatagaaatattttcaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatcatatgtcaaaacaaaaacaaaaaatccagacccaaatagaaatattttcaatta 320

                                                                       
Query: 121 aaaaaaa-cctgaagagataaaaaaaa-tcaacttaaagtatagctaaaattgatattat 178
           ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaacctgaagagataaaaaaaaatcaacttaaagtatagctaaaattgatattat 380

                                                                       
Query: 179 atatacatctccatgattgctttgttaattcaagcctatggcacacaaaagctgaagaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatacatctccatgattgctttgttaattcaagcctatggcacacaaaagctgaagaaa 440

                                                                       
Query: 239 cgtcaatacaacttaaagcagcttatgaaaatagtttgatttggagcaatcgtaagtgta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtcaatacaacttaaagcagcttatgaaaatagtttgatttggagcaatcgtaagtgta 500

                                                                       
Query: 299 gttttaaataagctttcctgtttctgacaaatgactcaaacagaactctttatatgtcat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttaaataagctttcctgtttctgacaaatgactcaaacagaactctttatatgtcat 560

                                                                       
Query: 359 tttccttaactgcactcttatgtgttgctgggtttaagaatacgtcccatcaaggctgag 418
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 tttccttaactgcactcttatgtgttgctgggtttaagaatacttcccatcaaggctgag 620

                                                                       
Query: 419 ccaatttcagaggactgctgtttaaaggcttttccttcttgcagacacaaaggggtaact 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaatttcagaggactgctgtttaaaggcttttccttcttgcagacacaaaggggtaact 680

                                                                       
Query: 479 gcctgagaagtttttgtagggatcgattgagttttctttatctttcaaacaaggctttgt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctgagaagtttttgtagggatcgattgagttttctttatctttcaaacaaggctttgt 740

                   
Query: 539 actacgtg 546
           ||||||||
Sbjct: 741 actacgtg 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 948
Length adjustment: 10
Effective length of query: 536
Effective length of database: 938
Effective search space:   502768
Effective search space used:   502768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)