BAC Information

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BAC

Clone NameMSMg01-516P04
Chromosome5 (Build37)
Map Location 14,852,697 - 14,853,305
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516P04.T7 (MSMg01no516_p04.b1)MSMg01-516P04.TJ (MSMg01no516_p04.g1)
ACCAG588821AG588822
length767767
length of high quality
(start - end)		612 (49 - 660)581 (80 - 660)
definitionCHROMAT_FILE: MSMg01no516_p04.b1 PHD_FILE: MSMg01no516_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:52 2005CHROMAT_FILE: MSMg01no516_p04.g1 PHD_FILE: MSMg01no516_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACTCTAAAGTAAATGGTCATGCAAGAGACCCTTACTATTT
GGAGCCAATAGTACTGAACAGAAGTGATTGCATGAAAGATACATAAGTAT
TTTCTCTCTGGGAAATACACTTTTATGGGTCATAGACCCCCTTTCTAGGT
CCAAACTCCAATAGCCAATGATCTGTCACCTCCTAGCTGCCTCACTTTGA
AACACTTGCTAATTAAAGTTCCTGAGTCATCATACTATCTGCTTCCTTCC
TGGAAGTTTAACTTCACATCCTTCACTTGAGTGAGCTCAAGCCAACCTTG
CATACATGAGACCCTGTCATAAAGTAAAGACGAGAGAGGAAGAGAGGTAG
AGAGATATAAAGTATATGTTTCAAGACTAAAATGACCAAATGATTCATGA
AGTAAAAATGAAAAATAGAAGTTGTACAGATAATAAAGTATTCATGGATA
AGAAAAATCTGGAAACAAAAGTAAATGAAAGTAATGAATACTATGGATTA
AAAAAATACTAAGGTAATTACACCTAATGTATGTGTGATGGTTTGCATAA
GAATGACCTCACTAGGCTCATAGATTTGAATGCTTGGTAAGCAGGGAGAG
GCATTGTTGAGAGATGTGGCCTTGTTGGTATAGATGTAGAATTATTGGAG
GAAATGTGTCACAGAGAGTGGCCTTGAAGTGTCAAGTAATCAAGGCAGGC
CTAGTGTTGTTGTCTTT

NTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATCTCTGTACCCCA
TCTTTAATTAGGTTATTTGGTTTGTCAGTGTTTAATTTCTTGAGTTCTTT
GTCTATTTTGTATATCAGATGTAGGGTTGGAGACGATATTTTCTCATTCT
GTAGGCTGCCATTTTGTGCCATTGATGTTGTCCTTTGCTTTATAGAAGCT
TTTCACTTTAATGAGGACCCATTTATTATTAATTTTTGCTCCTAATGCCT
GAGCTGTTGGTGTTCTGTTCAGGAATTGACTCATGTACCAGTGTGTTCAA
GTCTATTTCCCACTTTCTTCTCAGTTAGATTTAATGCATCAAGTTTTATC
TTGCTTTCTTTTATCCACTTGGACTTGAGTTTTGTGCAGGGTGACTATTT
GCAAATATGGACTATTTGCATTCTTTTACATGCAGACATCCAGTTAGACA
AGCATCATTTGTTTAAGAAGCTTTCTTTTTTTTTCCACTGTATGGTTTTG
GCTTCCATGTCAAAATTCAAGTGTCTGTAGGTATGTTGGTCTATTATTGG
GTCTTCAACTTGATTCCTTCCATTCATTAATATTTGTTTTTACAGCAACA
CCATAAAGTTTTTATAAATATTGCTCTGTAGTACAGCTGGGAATCANGAA
TGGTGATACCTTGAGAAGGTCTTTTATTATACATCATCATTTATATCTAA
GCTGGGGTTTTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_p04.b1 MSMg01no516_p04.b1 CHROMAT_FILE:
MSMg01no516_p04.b1 PHD_FILE: MSMg01no516_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:52 2005
         (612 letters)



>mm_chr5_14852570_14853582
          Length = 1013

 Score = 1154 bits (597), Expect = 0.0
 Identities = 606/609 (99%), Gaps = 1/609 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcactctaaagtaaatggtcatgcaagagacccttactatttggagccaatagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 736 gaattctcactctaaagtaaatggtcatgcaagagacccttactatttggagccaataga 677

                                                                       
Query: 65  actgaacagaagtgattgcatgaaagatacataagtattttctctctgggaaatacactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 actgaacagaagtgattgcatgaaagatacataagtattttctctctgggaaatacactt 617

                                                                       
Query: 125 ttatgggtcatagaccccctttctaggtccaaactccaatagccaatgatctgtcacctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttatgggtcatagaccccctttctaggtccaaactccaatagccaatgatctgtcacctc 557

                                                                       
Query: 185 ctagctgcctcactttgaaacacttgctaattaaagttcctgagtcatcatactatctgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctagctgcctcactttgaaacacttgctaattaaagttcctgagtcatcatactatctgc 497

                                                                       
Query: 245 ttccttcctggaagtttaacttcacatccttcacttgagtgagctcaagccaaccttgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 496 ttccttcctggaagtttaacttcacatccttcacttgagtgagctcaagtcaaccttgca 437

                                                                       
Query: 305 tacatgagaccctgtcataaagtaaagacgagagaggaagagaggtagagagatataaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tacatgagaccctgtcataaagtaaagacgagagaggaagagaggtagagagatataaag 377

                                                                       
Query: 365 tatatgtttcaagactaaaatgaccaaatgattcatgaagtaaaaatgaaaaatagaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tatatgtttcaagactaaaatgaccaaatgattcatgaagtaaaaatgaaaaatagaagt 317

                                                                       
Query: 425 tgtacagataataaagtattcatggataagaaaaatctggaaacaaaagtaaatgaaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtacagataataaagtattcatggataagaaaaatctggaaacaaaagtaaatgaaagt 257

                                                                       
Query: 485 aatgaatactatggatt-aaaaaaatactaaggtaattacacctaatgtatgtgtgatgg 543
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aatgaatactatggattaaaaaaaatactaaggtaattacacctaatgtatgtgtgatgg 197

                                                                       
Query: 544 tttgcataagaatgacctcactaggctcatagatttgaatgcttggtaagcagggagagg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tttgcataagaatgacctcactaggctcatagatttgaatgcttggtaagcagggagagg 137

                    
Query: 604 cattgttga 612
           |||||||||
Sbjct: 136 cattgttga 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space:   603806
Effective search space used:   603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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