Query= MSMg01no517_e21.b1 MSMg01no517_e21.b1 CHROMAT_FILE:
MSMg01no517_e21.b1 PHD_FILE: MSMg01no517_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:20 2005
(649 letters)
>mm_chr5_77537636_77538684
Length = 1049
Score = 1091 bits (564), Expect = 0.0
Identities = 579/584 (99%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 66 ttttttaaaattactttatttatttttaaagatttatttatttactttatgtgtatgagt 125
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 tttttt-aaattactttatttatttttaaagatttatttatttactttatgtgtatgagt 991
Query: 126 acaccattgctctcttcagacacgccagaagagggcaatcagatccttttacagatggtt 185
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 990 acaccattgctctcttcagacacgccagaagagggc-atcagatccttttacagatggtt 932
Query: 186 gtgagccaccatgtggttgctgggaattgaattcaggacctctggaagagcaggctatac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gtgagccaccatgtggttgctgggaattgaattcaggacctctggaagagcaggctatac 872
Query: 246 tgctgagccatctctccagcccgaggctctctttcatttgtgtgctcaatctgggtcaga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tgctgagccatctctccagcccgaggctctctttcatttgtgtgctcaatctgggtcaga 812
Query: 306 gttcagactctaaagagctcctgcatgagcagacagcctcagggacagatctgtaagaag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gttcagactctaaagagctcctgcatgagcagacagcctcagggacagatctgtaagaag 752
Query: 366 ccgcaagaggacctgatgctctagaacttggctaagagaagactagaatccacttaatca 425
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 751 ccgcaagaggacctgatgctatataacttggctaagagaagactagaatccacttaatca 692
Query: 426 tttgctgctagagggcacaagggccaacgaccagttcctcgcactgaccttcaaggaaaa 485
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tttgctgctagaaggcacaagggccaacgaccagttcctcgcactgaccttcaaggaaaa 632
Query: 486 agattcaaggtcaggggtgggtttgagccatagcacaaagcacgttacattgtatgccac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agattcaaggtcaggggtgggtttgagccatagcacaaagcacgttacattgtatgccac 572
Query: 546 gaagtacccggatgaatgcaaaggtccagcaagatacacaggcaagttctggaaaaccga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaagtacccggatgaatgcaaaggtccagcaagatacacaggcaagttctggaaaaccga 512
Query: 606 ctgaccaccaatctttcaattgttatgtctttgttcatttgttt 649
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctgaccaccaatctttcaattgttatgtctttgttcatttgttt 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_e21.g1 MSMg01no517_e21.g1 CHROMAT_FILE:
MSMg01no517_e21.g1 PHD_FILE: MSMg01no517_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:20 2005
(644 letters)
>mm_chr5_77371726_77372769
Length = 1044
Score = 1170 bits (605), Expect = 0.0
Identities = 635/645 (98%), Gaps = 1/645 (0%)
Strand = Plus / Plus
Query: 1 aatgctaatgaatctacattaagcagaaatgcacaaaagttatatattgatctatggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aatgctaatgaatctacattaagcagaaatgcacaaaagttatatattgatctatggcaa 259
Query: 61 aaggtaccctaaccagtcttccaggagcctaactgtatat-cccagtggaatgactaaaa 119
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 aaggtatcctaaccagtcttccaggagcctaactgtatattcccagtggaatgactaaaa 319
Query: 120 atgagaattgcagggtgtgggtgacacatgcttttccttccaacactcaggagacagaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgagaattgcagggtgtgggtgacacatgcttttccttccaacactcaggagacagaag 379
Query: 180 caagtcggatgtctagagttccaggccagccaaggctatgtagagagacgctgcctcaaa 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagtcggatgtcttgagttccaggccagccaaggctatgtagagagacgctgcctcaaa 439
Query: 240 gggaacagagaaggactaactgggtcttattgaatagctccacatgactccagaatgcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggaacagagaaggactaactgggtcttattgaatagctccacatgactccagaatgcag 499
Query: 300 tctatctatcatttgaggtctgatgttgtcacaacctatgcctcatcttggtctcactgt 359
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 500 tctatctatcatttgaggtctgatgttgtcacaacctacgcatcatcttggtctcactgt 559
Query: 360 gcaaatatgtccttaacaaggctctgcacgcaggcctgaagaagctctcctcatatccat 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 gcaaatatgtccttaacaaggctctgcactcaggcctgaagaagctctcctcatatccat 619
Query: 420 tattgcacatacttacatgcctgtaattccagctctcgagatgcataagcaggtgaattt 479
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattgcacacacttacatgcctttaattccagctctcgagatgcataagcaggtgaattt 679
Query: 480 gagtttagcctagactaactgaatcgcaggacacccagggctcttctgggggaatacaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagtttagcctagactaactgaatcgcaggacacccagggctcttctgggggaatacaga 739
Query: 540 ctactgtttcaacatgaaaactgctaaagctactaaagtgatctcctgccttcatacaaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctactgtttcaacatgaaaactgctaaagctactaaagtgatctcctgccttcatacaaa 799
Query: 600 ctacactaaggagcatccttgttctcggtgaagatcaaatgagaa 644
|||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 800 ctacactaaggagcatccttgttcacggtaaagatcaaatgagaa 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
