XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
CTGTGCTGGGGCATATACAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAG
GGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAG
CTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAG
ATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCT
ATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGG
CCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAATAAA
ATCTTGCTAGTGTATGCGATGGTGTCAGCGTTTGGATGCTGATTATGGGG
TGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGC
TCCAAACTTTGTCTCCGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATC
TAAGGAGAGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTC
ATGTGTTTAGCAAATTATATCTTATATCTTGGGTATCCTAGGTTTGGGGC
TAATATCCACTTATCAGTGAATACATATTGTGTGAGTTTCTTTGTGAATG
TGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGA
ATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAG
ATGTACCC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGACAGTGAGTGATCCTATTTCGAAGACTG
AACATGGATGATGGCTAAGAAAAAGCATCCAGAGTTGTCCTCTGGCTTCC
TCATGCACCAAACTGGCATGTGCCAGTACACATAGGAACACACAGAACAA
ACCATCTGCCCAAGGGAGTTCGTCATGGTCATCTCCCAAGAAGAGCCAGA
GCACCAGGTGCATGGAAGCATCTTCTTCCAAACTTCTATTGACCTGAGCT
TATATTATTGAATTTTGTATGTTATTAAGAGACATTGTAACCTTAAGAGA
CATTGTAAACCTCTTCTGGTTTGCATTGTGCATTGTTGATGGCCAGGGCC
TCTGTTTATTGGTTCTTATTCATAAGGAGCCATCATCTCACTTCTGCCAT
TGCTATCTCCCTGCAAACATCCTCATGACAAACTTCACCCTAAGGGAGCT
CTTCTCTGATAACAGGAGTTATCATCTTTCTCCTTAGCTAGCATATCTCA
CCTTGGGCAATGGAGAGACAGCTGCCTCAGAATGCGGTTAATCAGAGATG
GACTGAGGGGACTCCAAGAGAAAACACTGAAATTCTTACCTAGTGTCTCA
GTCCTTGGAGTGTAGCAGGATTTGCACTTGTGACGTGAAGGGTGGGTTGA
TTAATTATTACTGAGTTAATAGGGTTAATAGACTGAACGTTGGATAGACA
TACCACC

Query= MSMg01no517_j09.g1 MSMg01no517_j09.g1 CHROMAT_FILE:
MSMg01no517_j09.g1 PHD_FILE: MSMg01no517_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:43 2005
         (616 letters)



>mm_chr5_27145738_27146753
          Length = 1016

 Score =  893 bits (462), Expect = 0.0
 Identities = 516/542 (95%), Gaps = 13/542 (2%)
 Strand = Plus / Minus

                                                                        
Query: 75   tggcttcctcatgcaccaaactggcatgtgccagtacacataggaacacacagaacaaac 134
            |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1016 tggcttcctcattcaccaaactggcatgtgccagtacacataggaacacccagaacaaac 957

                                                                        
Query: 135  catctgcccaagggagttcgtcatggtcatctcccaagaagagccagagcaccaggtgca 194
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 956  catctgcacaagggagttcgtcatggtcatctcccaaaaagagccagagcagcaggtgca 897

                                                                        
Query: 195  tggaagcatcttcttccaaacttctattgacctgagcttatattattgaattttgtatgt 254
            ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 896  tggaagcatcttcctccaaacttctattaacctgagcttatattattgaattttgtatgt 837

                                                                        
Query: 255  tattaagagacattgtaaccttaagagacattgtaaacctcttctggtttgcattgtgca 314
            ||||||||||||||||||||             |||||||||||||||||| ||||||||
Sbjct: 836  tattaagagacattgtaacc-------------taaacctcttctggtttgtattgtgca 790

                                                                        
Query: 315  ttgttgatggccagggcctctgtttattggttcttattcataaggagccatcatctcact 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  ttgttgatggccagggcctctgtttattggttcttattcataaggagccatcatctcact 730

                                                                        
Query: 375  tctgccattgctatctccctgcaaacatcctcatgacaaacttcaccctaagggagctct 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  tctgccattgctatctccctgcaaacatcctcatgacaaacttcaccctaagggagctct 670

                                                                        
Query: 435  tctctgataacaggagttatcatctttctccttagctagcatatctcaccttgggcaatg 494
            ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 669  tctctgagaacaggagttatcatctttctccttagctagcacacctcaccttgggcaatg 610

                                                                        
Query: 495  gagagacagctgcctcagaatgcggttaatcagagatggactgaggggactccaagagaa 554
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 609  gagagacagctgcctcagaatgcggataatcagagatggactgaggggactccaagagaa 550

                                                                        
Query: 555  aacactgaaattcttacctagtgtctcagtccttggagtgtagcaggatttgcacttgtg 614
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 549  aacactgaaattcttacctagtgtctcagtccttggagtgcagcaggatttgcacttgtg 490

              
Query: 615  ac 616
            ||
Sbjct: 489  ac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)