XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
ACTCTATTTTTTTTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTAT
CCCAAAGGTCCCCCATACCCACCCCCCCAATCCCCTACCCACCCACTCCC
CCTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAG
ATCAATGGGCCTCTCTTTGCAGTGATGGCCGATTAGGCCATCCTTTGATA
CATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGCTTAGTTCATATTGT
TGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAATTTCTC
TAGCTCCTCCATTGGGGGCCGTGTGACCCATCCAATAGCTGACTGTGATC
ATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCT
ATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAG
CATTTGGAAGCTGATTATGGGATGGATCCCTGCATATGGCAATCACTAGA
TGGTCCATCCTTTCTTCACAGCTCCAAATTTTGTCTCTGTAACTCCTTCC
ATGGGTGTTTTGTTCCCATTTCTAAGAAAGGGTAAAGTGTCCACACTTTG
GTCTTCGTTCTTCTTGAATTTCATGCGTTTGGCAAGTTGTATCTTATATC
TTGGGTATTCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTTGCTTTCTCAGTCATAATATAAGGAGTTTT
TGCTTGCTTGCTTGCTTGCTTGCTTTCCTTTATTTTGTTTTGCTGCAAGT
CATCTTGCAATAAACTTGTATATTTCTGAATATTCCCAGAACTGTATAAT
GTGTGCTCTAAAGTAATGTTGATTGGTTAGTTATAGTAGCTAATATTCTC
TTGTATTGAAATCCAATTCGGGATGTAAAGAAGAGTGTCTGTCCTACAGA
GCTTTGCAAGTTCAAAATATTTTGCTGTCTACAATGTCATTGCCTCCTCT
TTGTGTGTGCACAGAGAAAGGAACTATAGCTATGAATGACATGAGTTTAG
AAGAATGAACTAGCTGTAAAAAGAGATTTCTATATCAAATTCTAGCAGCT
CACAGTACCAACCAGATTAAATTCAGGAGTGACCATTCATTACTGATTCA
GCTTCATGGGCAGTTCACTGGCATTTAATTTGTTTTTATATTCTTATTCC
TTTTTTAACTCTTTTTTAAAGTTGGATATTTTCTTTATTTACAGTTCAAA
TGTTATCCCCTTTCCAGATCCCCACCCTGAGAAACCCCCTATCCCACCCA
TCAGCTAACATGGTAACAAGCGTATTAAACTTTGCATTCACTATAGTGCT
CAATACATGTAATATGTATTCTAGGATATATATTATAAGCTATTCTCTGT
AGGTT

Query= MSMg01no517_k03.g1 MSMg01no517_k03.g1 CHROMAT_FILE:
MSMg01no517_k03.g1 PHD_FILE: MSMg01no517_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:47 2005
         (552 letters)



>mm_chr5_18471326_18472277
          Length = 952

 Score =  955 bits (494), Expect = 0.0
 Identities = 539/560 (96%), Gaps = 12/560 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgctttctcagtcataatataaggagtttttgcttgcttgcttgcttgcttgcttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 205 actttgctttctcagtcataatataaggagtttttgcttgcttgcttgcttgctt----t 260

                                                                       
Query: 61  cctttattttgttttgctgcaagtcatcttgcaataaacttgtatatttctgaatattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttattttgttttgctgcaagtcatcttgcaataaacttgtatatttctgaatattcc 320

                                                                       
Query: 121 cagaactgtataatgtgtgctctaaagtaatgttgattggttagttatagtagctaatat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaactgcataatgtgtgctctaaagtaatgttgattggttagttatagtagctaatat 380

                                                                       
Query: 181 tctcttgtattgaaatccaattcgggatgtaaagaagagtgtctgtcctacagagctttg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tctcttgtattgaaatccaattcgggatgtaaagaagagtgtctgtcctacaaagctttg 440

                                                                       
Query: 241 caagttcaaaatattttgctgtctacaatgtcattgcctcctctttgtgtgtgcacagag 300
           |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 caagttcaaaatattttgttctctacaatgtcattgcctcctctttctgtgtgcacagag 500

                                                                       
Query: 301 aaaggaactatagctatgaatgacatgagtttagaagaatgaactagctgtaaaaagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggaactatagctatgaatgacatgagtttagaagaatgaactagctgtaaaaagaga 560

                                                                       
Query: 361 tttctatatcaaattctagcagctcacagtaccaaccagattaaattcaggagtgaccat 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 561 tttctatatcaaattctagcagctcacagtatcaaccagattaaattcaggagtggccat 620

                                                                       
Query: 421 tcattactgattcagcttcatgggcagttcactggcatttaatttgtttttatattctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcattactgattcagcttcatgggcagttcactggcatttaatttgtttttatattctta 680

                                                                       
Query: 481 ttc------ctttttt--aactcttttttaaagttggatattttctttatttacagttca 532
           |||      |||||||  |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttattccttttttttaactctattttaaagttggatattttctttatttacagttca 740

                               
Query: 533 aatgttatcccctttccaga 552
           |||| |||||||||||||||
Sbjct: 741 aatgctatcccctttccaga 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)