BAC Information

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BAC

Clone NameMSMg01-517M05
Chromosome5 (Build37)
Map Location 31,938,413 - 31,938,990
singlet/doubletsinglet
Overlap geneRbks
Upstream gene4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33
Downstream geneLOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517M05.T7 (MSMg01no517_m05.b1)MSMg01-517M05.TJ (MSMg01no517_m05.g1)
ACCAG589434AG589435
length762754
length of high quality
(start - end)
578 (69 - 646)588 (70 - 657)
definitionCHROMAT_FILE: MSMg01no517_m05.b1 PHD_FILE: MSMg01no517_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:57 2005CHROMAT_FILE: MSMg01no517_m05.g1 PHD_FILE: MSMg01no517_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TTACTTTTGACAAAAAAGGGCAAATAGAGGTCTTAGCCTATTTTCAGTCT
CCATAAGCCATTTTTCTCCATGGCTTCCTAGACTGCAGGCAACAGGCAAA
ACAGCTTTCCCCAAATTTCTACCCCCATCACAGAGTGAGTTTCAGGTAGA
AAGTGAAGCTAGAGAAGGGTTCTCAGAGATTGCTGAATATATGGTGTCCC
TTTGGGCTCCAGCTTGGACTGGAAGTAGGGTGAGGGGCACGAAGGGGTAC
AGGGTTGTCTGCTGTGTATGTTATTGGATAAGTCTGCATTTTATATGAGA
TCTTTTGGATGCAAGTGTTACTTCAGACCACCCCATCAAGATGTTCCAGA
ATTGGTGTGACTGGCCAGAAAGAGGCCATCACTGACTGGTGAGGCTGAAA
GAGAACCCCAATACACGGGCAGGCCCATGGGGAGCCAGCAAATGACCTCT
GTCAATCCAGGAGCCATGTGTCACCAATCAGAGGGCAGCCAACCTGAACA
CCACAGCCCTGTACACGGGGAAACCTGAGAGCTCTCAGAGCACTGGATCC
AGCAGGGGCTTCTCTTGGCTGTGACTCAATTTTAAATAAAATCCCAGTGA
TACGGTTGTTATTATCACCTGTTATCTTACAAATAAAGGCAGGGTACCAA
CAAGCGAAGAATCTAGAGCCTTTTGCTGCACAGTAGTTGAAAGATAATCA
ATGTAGTGAAAA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACA
CATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGTCCCTTC
CTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_m05.b1 MSMg01no517_m05.b1 CHROMAT_FILE:
MSMg01no517_m05.b1 PHD_FILE: MSMg01no517_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:57 2005
         (578 letters)



>mm_chr5_31938213_31939190
          Length = 978

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaaatagaggtcttagcctattttcagtctccataagccatttttctccatggcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 778 ggcaaatagaggtcttagcctattttcagtctccataagccatttttctccttggcttcc 719

                                                                       
Query: 61  tagactgcaggcaacaggcaaaacagctttccccaaatttctacccccatcacagagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 718 tagactgcaggcaacaggcaaaacagctttccccaaatttctacccccagcacagagtga 659

                                                                       
Query: 121 gtttcaggtagaaagtgaagctagagaagggttctcagagattgctgaatatatggtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtttcaggtagaaagtgaagctagagaagggttctcagagattgctgaatatatggtgtc 599

                                                                       
Query: 181 cctttgggctccagcttggactggaagtagggtgaggggcacgaaggggtacagggttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cctttgggctccagcttggactggaagtagggtgaggggcacgaaggggtacagggttgt 539

                                                                       
Query: 241 ctgctgtgtatgttattggataagtctgcattttatatgagatcttttggatgcaagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctgctgtgtatgttattggataagtctgcattttatatgagatcttttggatgcaagtgt 479

                                                                       
Query: 301 tacttcagaccaccccatcaagatgttccagaattggtgtgactggccagaaagaggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tacttcagaccaccccatcaagatgttccagaattggtgtgactggccagaaagaggcca 419

                                                                       
Query: 361 tcactgactggtgaggctgaaagagaaccccaatacacgggcaggcccatggggagccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcactgactggtgaggctgaaagagaaccccaatacacgggcaggcccatggggagccag 359

                                                                       
Query: 421 caaatgacctctgtcaatccaggagccatgtgtcaccaatcagagggcagccaacctgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caaatgacctctgtcaatccaggagccatgtgtcaccaatcagagggcagccaacctgaa 299

                                                                       
Query: 481 caccacagccctgtacacggggaaacctgagagctctcagagcactggatccagcagggg 540
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 298 caccacagccctgtacacggggaaacctgagagctctcagagtactgtatccagcagggg 239

                                                 
Query: 541 cttctcttggctgtgactcaattttaaataaaatccca 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cttctcttggctgtgactcaattttaaataaaatccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)