Query= MSMg01no517_n02.b1 MSMg01no517_n02.b1 CHROMAT_FILE:
MSMg01no517_n02.b1 PHD_FILE: MSMg01no517_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:02 2005
(634 letters)
>mm_chr5_117557556_117558589
Length = 1034
Score = 1187 bits (614), Expect = 0.0
Identities = 626/630 (99%)
Strand = Plus / Plus
Query: 5 gaattcagactaagagcccagactttatgtctgatgaaaagcatccgcagcaggcaagcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagactaagagcccagactttatgtctgatgaaaagcatccgcagcaggcaagcc 264
Query: 65 cctgtcccagaagctaaagtcactctagcccggggaactgtgggccaggaagcctgctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgtcccagaagctaaagtcactctagcccggggaactgtgggccaggaagcctgctgc 324
Query: 125 atggttccttaactcccggcaccccttaactttatgtagatcagtacctttggccaatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggttccttaactcccggcaccccttaactttatgtagatcagtacctttggccaatga 384
Query: 185 aatgttgagtttccgaaagccacagacaatatgctagtgacatcacattgctcaaagcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgttgagtttccgaaagccacagacaatatgctagtgacatcacattgctcaaagcac 444
Query: 245 caatgtgcacaaatgcttgggcaccctgaacaaacgctggctgcgtacagcagacaacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatgtgcacaaatgcttgggcaccctgaacaaacgctggctgcgtacagcagacaacag 504
Query: 305 accagcagcattccagccactatgtgcctgaaatgcatagaggccaacacagccacgccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accagcagcattccagccactatgtgcctgaaatgcatagaggccaacacagccacgccc 564
Query: 365 ctcatctctggcacagacaagctactcaaggtgtgatgacttcagcctcctccaccaagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcatctctggcacagacaagctactcaaggtgtgatgacttcagcctcctccaccaagg 624
Query: 425 ggacaagagtgaggagccgcccagacgccctgactcctggaggacagagcacagctttct 484
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 625 ggacaagagtgaggagccgcccagacaccctgactcctggaggacaaagcacagctttct 684
Query: 485 gtgatggcagccttggctcacccctcccctgccctttctcccagtggaaggttcgagtgt 544
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgatggcaaccttggctcacccctcccctgccctttctcccagtggaaggttcgagtgt 744
Query: 545 gttttgggcttgcattctatcagcatgtaggggttgggcctgagctggcgcactgacctg 604
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 gttttgggcttgcattctatcagcatggaggggttgggcctgagctggcgcactgacctg 804
Query: 605 cattccggatccgctctcggtactgctggt 634
||||||||||||||||||||||||||||||
Sbjct: 805 cattccggatccgctctcggtactgctggt 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_n02.g1 MSMg01no517_n02.g1 CHROMAT_FILE:
MSMg01no517_n02.g1 PHD_FILE: MSMg01no517_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:02 2005
(458 letters)
>mm_chr5_117697887_117698743
Length = 857
Score = 814 bits (421), Expect = 0.0
Identities = 445/453 (98%), Gaps = 2/453 (0%)
Strand = Plus / Minus
Query: 1 cctctttaatgagattcccagaggggagcagggcttgctttaatgccatcatgatggatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cctctttaatgagattcccagaggggagcagggcttgctttaatgccatcatgatggatc 571
Query: 61 tgaacgctgcgcacgctcaggcctacagctgatacgatgttcttaggtgactaccatgtg 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 570 tgaacgctgcgcacgctcaggcctacagctgatacgatgctcttaggtgactaccacatg 511
Query: 121 gcaggaagcccagagatagaccaggaggaggactgggcatttcctgtagtaccccagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 510 gcaggaagcccagagatagaccaggaggaggactgggcatttcctgtagta-cccggggg 452
Query: 181 tgcatccctgcaaacagggtggtcctgctgcctgttttatcgcacctggctcaaatgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgcatccctgcaaacagggtggtcctgctgcctgttttatcgcacctggctcaaatgtgt 392
Query: 241 gacaaaggcaactgacagagtccagcaagctctccttggatctggttgacttccaggagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gacaaaggcaactgacagagtccagcaagctctccttggatctggttgacttccaggagg 332
Query: 301 gcagctttgctttctaacaccccttacccccatggttaggggagtcactttctcagactc 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 331 gcagctttgctttctaacacccctcacccccatggttaggggagtcactttctcagactc 272
Query: 361 caaattaaccttccatttcccaccaccaaactctcttgagttttaggttgtcttcctggg 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caaattaaccttccatttgccaccaccaaactctcttgagttttaggttgtcttcctggg 212
Query: 421 cacatacagagtt-ttttttttttttttttttt 452
||||||||||||| |||||||||||||||||||
Sbjct: 211 cacatacagagttgttttttttttttttttttt 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 857
Length adjustment: 10
Effective length of query: 448
Effective length of database: 847
Effective search space: 379456
Effective search space used: 379456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
