BAC Information

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BAC

Clone NameMSMg01-518H05
Chromosome5 (Build37)
Map Location 30,584,407 - 30,584,963
singlet/doubletsinglet
Overlap geneD5Wsu178e
Upstream geneLmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325
Downstream geneGm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518H05.T7 (MSMg01no518_h05.b1)MSMg01-518H05.TJ (MSMg01no518_h05.g1)
ACCAG589956AG589957
length767775
length of high quality
(start - end)		562 (52 - 613)557 (80 - 636)
definitionCHROMAT_FILE: MSMg01no518_h05.b1 PHD_FILE: MSMg01no518_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:51 2005CHROMAT_FILE: MSMg01no518_h05.g1 PHD_FILE: MSMg01no518_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTAGCTCTGTACCCCATTTTAGAATAGGGTTATT
TGGTTTTCTGGAGTCTAACCTCTTGAGATATATATATTACATCCACTCCA
GTATTGACAAGTGTGACAGGCCCCGGAAAACCTGGGCACTGTCCAGAGGC
AAAAAGTTCACGGAAACTTAGTCTCCTGGAATCGTGGCATCCTATATAAA
GAATGCTCCAATGTCCTTGCTTTAGTTGGTAAACATATCTGTGTGCTTTC
CCTTAATATTGCTTTATTATAAGTGCTCCTAAGGATTGATTTTTTGACAT
ACAGCTAAGTTAGATTCTAGGCAGTCCTTGATCCAACCCTGGGCATGGAT
AGCTAAGTCACTGCCCTACCCAGGAATTTACCATTATCTAGGAAGAAGGA
AGTTTGTGACCTAAGAAGGAACCAGAGTAGATATTTAGAACTATAGATAG
CTGAGTTACATCCATATACAAGTATTTACAATGGCCTAGGGGGAAGGTGG
ACTATACAATAGACTAGAATAGGAACTATGGCAAGGGCATGAAGCCCTTG
CCCCTGGCTTCTAAGATTAAGTGGACCTTAGGTGGAGCTGTTTTTGATCC
CAGTTGTTAACATTGAATTTTATCCCAGTTGGTTCTTGCCAGTCCTTCCG
TGTTTGCATTCCTCTGTTTTGTGTAAAATTCAGTAAACCTTTTTGTACCT
TGCTGGTATGTCACCAA

NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTTGATTACATA
AAATCCTGTCTCAAAAAAAGGGGAAAAATAACCCGGGCTGAGGTAATGGT
GGGAAGAGGCTCTGCAACAGGAGGCTAACACAAGGCTGAAGACAGTGGCT
TCTGAGAGAGCAACAGACAGGGCATAAAGATGGTTACCACAACCGAAAAT
CTTCAGCGTTCAGTGATATAAGAAGGAGGGAATCCAAGAGGAAGAGACGC
TTATTCTTTTAACCAGACAGGTCATAAGGTCTCCATATTTCATCTATCAT
ATTCTTTCAAATCAACAATTTTCAACTTGAAGTAGGTATGAAATGTCCAC
TAAATGTAGATTCTCCAACACAGGGTAGACTGAGCTGGATAACACCCTAA
CAACACTTGTGTGGTGATCTATTCTGGTATTCCTTCTTCTCTGATTAGAA
AAGGGTTGGTGCTCAACAACAAAAGCCCCCTCGGTTTTGCTCACATTCTG
GTAGACACTGTAAGGGTCGTAGGGTGCTTGCTGGAGAACAAGGAAGAATG
TTAGCACTCGCTACAGTCAGACACTGGCTTTAGAACAAAGTGATGTTACA
ACAGGCTTCCACGTGGGGCTTCTTACCAATAATCATTGCAGTGGATAGGT
CTCTATATAAGAAATTAAACAGGGAAAGGTCATACCANGCCTCAACTCCC
ACAACGCAGTCACTATGTAGACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_h05.g1 MSMg01no518_h05.g1 CHROMAT_FILE:
MSMg01no518_h05.g1 PHD_FILE: MSMg01no518_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:51 2005
         (557 letters)



>mm_chr5_30584167_30585123
          Length = 957

 Score = 1062 bits (549), Expect = 0.0
 Identities = 555/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagccttgattacataaaatcctgtctcaaaaaaaggggaaaaataacccgggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaggccagccttgattacataaaatcctgtctcaaaaaaaggggaaaaataacccgggct 738

                                                                       
Query: 61  gaggtaatggtgggaagaggctctgcaacaggaggctaacacaaggctgaagacagtggc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaggtaatggtgggaagaggctttgcaacaggaggctaacacaaggctgaagacagtggc 678

                                                                       
Query: 121 ttctgagagagcaacagacagggcataaagatggttaccacaaccgaaaatcttcagcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttctgagagagcaacagacagggcataaagatggttaccacaaccgaaaatcttcagcgt 618

                                                                       
Query: 181 tcagtgatataagaaggagggaatccaagaggaagagacgcttattcttttaaccagaca 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 617 tcagtgatataagaaggagggaatccaagaggaaaagacgcttattcttttaaccagaca 558

                                                                       
Query: 241 ggtcataaggtctccatatttcatctatcatattctttcaaatcaacaattttcaacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggtcataaggtctccatatttcatctatcatattctttcaaatcaacaattttcaacttg 498

                                                                       
Query: 301 aagtaggtatgaaatgtccactaaatgtagattctccaacacagggtagactgagctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagtaggtatgaaatgtccactaaatgtagattctccaacacagggtagactgagctgga 438

                                                                       
Query: 361 taacaccctaacaacacttgtgtggtgatctattctggtattccttcttctctgattaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taacaccctaacaacacttgtgtggtgatctattctggtattccttcttctctgattaga 378

                                                                       
Query: 421 aaagggttggtgctcaacaacaaaagccccctcggttttgctcacattctggtagacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaagggttggtgctcaacaacaaaagccccctcggttttgctcacattctggtagacact 318

                                                                       
Query: 481 gtaagggtcgtagggtgcttgctggagaacaaggaagaatgttagcactcgctacagtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtaagggtcgtagggtgcttgctggagaacaaggaagaatgttagcactcgctacagtca 258

                            
Query: 541 gacactggctttagaac 557
           |||||||||||||||||
Sbjct: 257 gacactggctttagaac 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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