Query= MSMg01no518_i19.b1 MSMg01no518_i19.b1 CHROMAT_FILE:
MSMg01no518_i19.b1 PHD_FILE: MSMg01no518_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:58 2005
(702 letters)
>mm_chr5_15695503_15696605
Length = 1103
Score = 1321 bits (683), Expect = 0.0
Identities = 695/699 (99%), Gaps = 1/699 (0%)
Strand = Plus / Minus
Query: 5 gaatt-aaattattttgatgttttataaaattagaatgtacgtcttcagtttaagtattc 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattcaaattattttgatgttttataaaattagaatgtacgtcttcagtttaagtattc 844
Query: 64 aaactgtatttatttaaacaacataaaataaaaagttaaaacgtcaaataaaaatgttct 123
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 843 aaactgtatttatttaaacaacataaaataaaaagttaaaatgtcaaataaaaatgttct 784
Query: 124 aacattaaaatggcacttactttgcttaacataaattatgaaaagcagtttttaaataag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aacattaaaatggcacttactttgcttaacataaattatgaaaagcagtttttaaataag 724
Query: 184 aaattgtgatttaaaaaaagaacgcgttactcagctaagggcatgcataaagattgttta 243
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 723 aaattgtgatttaaaaaaagaacgcgttactcagctaagggcatgcctaaagattgttta 664
Query: 244 ctctagattcatgccatttgaaggatatgcaaaatattgcagagatatggggctaattag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctctagattcatgccatttgaaggatatgcaaaatattgcagagatatggggctaattag 604
Query: 304 agtcttctacattttaaactatcattccacaaatgtttagaacaaaggaacacatcaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agtcttctacattttaaactatcattccacaaatgtttagaacaaaggaacacatcaatg 544
Query: 364 tattcagtttgatcatatttttctttttactgcataagaaactcagtgtgaaaaatattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tattcagtttgatcatatttttctttttactgcataagaaactcagtgtgaaaaatattt 484
Query: 424 tacatttaagagatcaaacgatttgcaagtcagtctccaggtgtgaagagtgaggagaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tacatttaagagatcaaacgatttgcaagtcagtctccaggtgtgaagagtgaggagaag 424
Query: 484 gtgttagcagccaattaacctttacagagcccgccccttcccactcagccagaaggcagc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtgttagcagccaattaacctttacagagcccgccccttcccactcagccagaaggcagc 364
Query: 544 agttcctcctcctgatgctcaagatttgggctactttcatgattccttgtcaaactcaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agttcctcctcctgatgctcaagatttgggctactttcatgattccttgtcaaactcaaa 304
Query: 604 tatcggatcctaagccctccagaggataacgcgtagtgacagtagatcaaaggaaatgat 663
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 303 tatcggatcctaagccctccagaggataacgcttagtgacagtagatcaaaggaaatgat 244
Query: 664 tgcttgaatgtttacatctttaatctaaatttaccaaat 702
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgcttgaatgtttacatctttaatctaaatttaccaaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space: 756356
Effective search space used: 756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_i19.g1 MSMg01no518_i19.g1 CHROMAT_FILE:
MSMg01no518_i19.g1 PHD_FILE: MSMg01no518_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:59 2005
(680 letters)
>mm_chr5_15552758_15553837
Length = 1080
Score = 1268 bits (656), Expect = 0.0
Identities = 677/690 (98%), Gaps = 10/690 (1%)
Strand = Plus / Plus
Query: 1 aggacatgtacatcgagaaaaaggagaggcaccttggatgtgatagaggtgaaagctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aggacatgtacatcgagaaaaaggagaggcaccttggatgtgatagaggtgaaagctgga 250
Query: 61 ggcagccgagcttatccgtcgagtattaagagcaggagataaactctaggattttcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggcagccgagcttatccgtcgagtattaagagcaggagataaactctaggattttcagtt 310
Query: 121 ttgttaaatttatgggcatttaccatattcacagtcattcttccgccctgaatacttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttgttaaatttatgggcatttaccatattcacagtcattcttccgccctgaatacttgtt 370
Query: 181 taccggcactctgtagttctgtgactgctatgttttgggaattgctctttcttttatttc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taccagcactctgtagttctgtgactgctatgttttgggaattgctctttcttttatttc 430
Query: 241 tgtg----------tttgccagccacagggccaggaacaccagggctgctaatgttgctg 290
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgtgctgtcaaatgtttgccagccacagggccaggaacaccagggctgctaatgttgctg 490
Query: 291 tgcttctatgatccaatctctcacctaaatggcagtctctagcccttagctgacacttca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgcttctatgatccaatctctcacctaaatggcagtctctagcccttagctgacacttca 550
Query: 351 cagcaattgcccaatcagaaccggaagctaaatcagcatattaggaaccagcaagcgtca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagcaattgcccaatcagaaccggaagctaaatcagcatattaggaaccagcaagcgtca 610
Query: 411 cgcaatgcctgtcctgagaaaacttcctgcatgttagttactggctcagccgctgctgct 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cgcaatgcctgtcctgagaaaacttcctgcatgttagttactggctcagccgctgctgct 670
Query: 471 cttctggagtactttaggcgtgcccactgactcagagaacaccatttctcagctgcgtgg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cttctggagtactttaggcgtgcccactgactcagagaacaccatttctcagctgcgtgg 730
Query: 531 aaggcacatggaataaatactggaaggaggacagtttaaagacttaaaagcagttcctgt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aaggcacatggaataaatactggaaggaggacagtttaaagacttaaaagcagttcctgt 790
Query: 591 caaggcagaccatacttttcctttcagcttaatactcgcaggggaattatcccagtgatc 650
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 791 caaggcagaccatacttttcctttcagctgaatactcgcaggggaattatcccaatgatc 850
Query: 651 tgcctgggctttattgccacataagtaggc 680
||||||||||||||||||||||||||||||
Sbjct: 851 tgcctgggctttattgccacataagtaggc 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
