Query= MSMg01no518_j15.b1 MSMg01no518_j15.b1 CHROMAT_FILE:
MSMg01no518_j15.b1 PHD_FILE: MSMg01no518_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:03 2005
(602 letters)
>mm_chr5_137039014_137040010
Length = 997
Score = 1021 bits (528), Expect = 0.0
Identities = 553/566 (97%), Gaps = 11/566 (1%)
Strand = Plus / Minus
Query: 5 gaattctctgcaatta--tgaattttaaaaaggttctctccttaagtcagaaaacaaact 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattctctgcaa--aagtgaattttaaaaaggttctctccttaagtcagaaaacaaact 502
Query: 63 cagtttttgctgcaagtctattttctggttgctccctcccccccccccctttttctggaa 122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 cagtttttgctgcaagtctattttctggttgc-----cccccccccccctttttctggaa 447
Query: 123 acgttacattggtgtttgtatatgtgtttcctgcagcccaacactgcttcttgtaataag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acgttacattggtgtttgtatatgtgtttcctgcagcccaacactgcttcttgtaataag 387
Query: 183 tatataatttcaattaaaatatctcgtctagttagtgcctttgataggacaatgaacgga 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacataatttcaattaaaatatctcgtctagttagtgcctttgataggacaatgaacgga 327
Query: 243 cacaaaagatgcagggcactcctgatttttctttccttggtccttttaatataggtgtct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cacaaaagatgcagggcactcctgatttttctttccttggtccttttaatataggtgtct 267
Query: 303 taagagtctgggtgtgggaagggttattatcagttgctcaaagcttttgcctgggtgaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taagagtctgggtgtgggaagggttattatcagttgctcaaagcttttgcctgggtgaaa 207
Query: 363 cc--tttttttttttttttttttttaaggcacaagtcagtgcaaggataaaataaatgca 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cctttttttttttttttttttttttaaggcacaagtcagtgcaaggataaaataaatgca 147
Query: 421 gtagctcttgatgggtggaagctgtttgggctgtcgcccattaacactcaagtctacgtt 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 146 gtagctcttgatgggtggaagctgtttgggctgtcgcccattagcactcaagtctacgtt 87
Query: 481 ggaatggggaacaacagctctgtctacccaagaattgctctctcctcatcccccctagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ggaatggggaacaacagctctgtctacccaagaattgctctctcctcatcccccctagct 27
Query: 541 gacctgtagtctgggcaaccccgctg 566
||||||||||||||||||||||||||
Sbjct: 26 gacctgtagtctgggcaaccccgctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 997
Length adjustment: 10
Effective length of query: 592
Effective length of database: 987
Effective search space: 584304
Effective search space used: 584304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_j15.g1 MSMg01no518_j15.g1 CHROMAT_FILE:
MSMg01no518_j15.g1 PHD_FILE: MSMg01no518_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:03 2005
(676 letters)
>mm_chr5_136870967_136872045
Length = 1079
Score = 1278 bits (661), Expect = 0.0
Identities = 672/677 (99%), Gaps = 3/677 (0%)
Strand = Plus / Plus
Query: 1 actctgtagctggggatgaccttgaatgcctcatcttctggcctccacaggtatgtgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagctggggatgaccttgaatgcctcatcttctggcctccacaggtatgtgctc 260
Query: 61 ccattccagtttattcagcagggggtcgaactcatgatttcaagtacagttggtaaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattccagtttattcagcagggggtcgaactcatgatttcaagtacagttggtaaatgc 320
Query: 121 tctaccaactatatgagctatatccctagtccatgaggtttaagagaggctggctttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaccaactatatgagctatatccctagtccatgaggtttaagagaggctggctttcta 380
Query: 181 gctgaggccgccagctccctggcaagccttgtcaaacgtctggaatgatcagtacattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gctgaggccgccagctccctggcaagccttgtcaaacgtctggaatgatcagtacgttct 440
Query: 241 gaggagtccaatagcctc---cttctgtgatccccttcttctgtctccttcccatggctg 297
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggagtccaatagcctccttcttctgtgatccccttcttctgtctccttcccatggctg 500
Query: 298 ctgccctgaagtatgcactagtccccagctcatctttcctgtggtggctgctcttgttca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgccctgaagtatgcactagtccccagctcatctttcctgtggtggctgctcttgttca 560
Query: 358 ctgctcacagccagtgagcggctgccactcagtttctaggctttcacatgagccttctca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctcacagccagtgagcggctgccactcagtttctaggctttcacatgagccttctca 620
Query: 418 ggcatatccaggcaaggcagtatctatgcccaagcctacttcctccactttcagtccaga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcatatccaggcaaggcagtatctatgcccaagcctacttcctccactttcagtccaga 680
Query: 478 cttccctctggctggcagagttctagggaagagcagggttgggaggaagtgccagaactt 537
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttccctctggctggaagagttctagggaagagcagggttgggaggaagtgccagaactt 740
Query: 538 tggggctggctgcttgaccagaactgccagcagctagaaatgacaaacgtcacctgccag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggggctggctgcttgaccagaactgccagcagctagaaatgacaaacgtcacctgccag 800
Query: 598 ggctgaacaagcaagtgatctaacatagtcaaatgacctaacacagaggaaaaacaagtg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggctgaacaagcaagtgatctaacatagtcaaatgacctaacacagaggaaaaacaagtg 860
Query: 658 gcattgactttgttccc 674
|||||||||||||||||
Sbjct: 861 gcattgactttgttccc 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1079
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1069
Effective search space: 711954
Effective search space used: 711954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
