Query= MSMg01no518_m15.b1 MSMg01no518_m15.b1 CHROMAT_FILE:
MSMg01no518_m15.b1 PHD_FILE: MSMg01no518_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:18 2005
(706 letters)
>mm_chr5_83353268_83354371
Length = 1104
Score = 1307 bits (676), Expect = 0.0
Identities = 695/702 (99%), Gaps = 2/702 (0%)
Strand = Plus / Plus
Query: 5 gaattcctatcatactggctattgtcctgaatcaatgttagaatatcatcagttaatttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatcatactggctattgtcctgaatcaatgttagaatatcatcagttaatttg 264
Query: 65 caagcatcacttgatcacttgtccttcacagttgttttgcaaagaaattttaaattctac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagcatcacttgatcacttgtccttcacagttgttttgcaaagaaattttaaattctac 324
Query: 125 tcattctagaagaattttatcaggcaggataaacttgtaatgttgcctgctgcttggttg 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcattctagaagaattttatcgggcaggataaacttgtaatgttgcctgctgcttggttg 384
Query: 185 atcttactgtccaatgctaaaagctcatttatacaatttattattgtttttaattggtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcttactgtccaatgctaaaagctcatttatacaatttattattgtttttaattggtta 444
Query: 245 tgtatcacattatactcccttttacaagaatttattcttataatgagcaaatgacaacct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtatcacattatactcccttttacaagaatttattcttataatgagcaaatgacaacct 504
Query: 305 tttgaaattcctagctaatactcattgattgaatgaggaaatgttcctctaagacaaact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgaaattcctagctaatactcattgattgaatgaggaaatgttcctctaagacaaact 564
Query: 365 ttaaaaacagctcacatttctttttttttgatcaataatgaagcatattacatatgtatt 424
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 565 ttaaaaacagctcacatttcttttttt--gatcaataatgaagcatattatatatgtatt 622
Query: 425 tttccaccaaagaatgatagatcatgcattatttggaaaaagaactgaacattatgatca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttccaccaaagaatgatagatcatgcattatttggaaaaagaactgaacattatgatca 682
Query: 485 aactcatagaaatgctagtaagtcaataatctaactttgaaatacaattctgaaatgttt 544
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 683 aactcatagaaatgctagtaagtcaataatctaactttgaaatgcaattctgaaatgttt 742
Query: 545 ttttctattattttaagttccccactgcttcacttttacagcattaaaaaactgaccaga 604
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 743 ttttctgttattttaagttccccactgcttcacttttacagcattaaaaaactgacctga 802
Query: 605 cacagaagaaataagagtcctgaaagtcaagatattgggagggaaaacctgggctgataa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cacagaagaaataagagtcctgaaagtcaagatattgggagggaaaacctgggctgataa 862
Query: 665 ttagagaagagaaataaaatggacaaaaggaacagctggggc 706
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttagagaagagaaataaaatggacaaaaggaacagctggggc 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1104
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1094
Effective search space: 761424
Effective search space used: 761424
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_m15.g1 MSMg01no518_m15.g1 CHROMAT_FILE:
MSMg01no518_m15.g1 PHD_FILE: MSMg01no518_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:18 2005
(660 letters)
>mm_chr5_83528651_83529710
Length = 1060
Score = 1222 bits (632), Expect = 0.0
Identities = 653/660 (98%)
Strand = Plus / Minus
Query: 1 tttgttcagttctgagccccattttttaatggggttatttgattttatggagtctacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 tttgttcagttctgagccccattttttaatggggttatttgattttatggagtctacctt 990
Query: 61 cttgagttctttatatatattggatattagtcccctgtccgatttgggacaggtaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 cttgagttctttatatatattggatattagtcccctgtccgatttgggacaggtaaagat 930
Query: 121 cctttcccaatctgttggtggtctttttgtcttattgacagtgtcttttgccttgcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cctttcccaatctgttggtggtctttttgtcttattgacagtgtcttttgccttgcagaa 870
Query: 181 gctttgcaattttatgaggtcccatttatcgattctcgatcttacagcacaagccattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gctttgcaattttatgaggtcccatttatcgattctcgatcttacagcacaagccattgc 810
Query: 241 tgttctattcaggaatttttcccctgtacccatattctaatgagttaattttctttaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgttctattcaggaatttttcccctgtacccatattctaatgagttaattttctttaaaa 750
Query: 301 gaatgcaatgctttcaacgtttctgaattgttctactgttgtaaagtgcttgttgatgtg 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 749 gaatgcaatgctttcaacgtttctgaattgttctacttttgtaaagtgcttgttgatgtg 690
Query: 361 acactaatttaaggtgctttatatagggttgcagctgagggtaaggtgagacactcaagg 420
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 689 acactaattcaaggtgctttatatagggttgcagctgggggtaaggtgagacactcaagg 630
Query: 421 catcttagaatacatttcccttacaatctttctgtcagcagtaagtctgtcttaagctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 629 catcttagaatacatttcccttacaatctttctgtcagcagtaagtctgccttaagctgc 570
Query: 481 ttgttgcatttgattgtattttatctttcctgactcaggtaagtttataataggttcaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 569 ttgttgcatttgattgtattttatctttcctgactcaggtaagtttataatagatacaat 510
Query: 541 taatatatttcactgaaaacatggtactttcaacatatatgtgtatatatacacacattt 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 509 taatatatttcactgaaaacatggtaatttcaacatatatgtgtatatatacacacattt 450
Query: 601 ctgttgttcatatatatgtatatatacatatatgcatacacatatatacacatgtataca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgttgttcatatatatgtatatatacatatatgcatacacatatatacacatgtataca 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
