Query= MSMg01no518_o18.b1 MSMg01no518_o18.b1 CHROMAT_FILE:
MSMg01no518_o18.b1 PHD_FILE: MSMg01no518_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:29 2005
(657 letters)
>mm_chr5_20630548_20631605
Length = 1058
Score = 1137 bits (588), Expect = 0.0
Identities = 626/650 (96%), Gaps = 21/650 (3%)
Strand = Plus / Minus
Query: 12 tatttcatacatatttcatctgactaaaaatatacctgattgccatgttccaactaatct 71
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1058 tatttcatacatatttcatctgact--aaatatacctgattgccatgttccaactaatct 1001
Query: 72 attaaaattcccttttaacgtctatagtttaatagtatctttagcttccattacagcatc 131
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1000 attaaaatacccttttaacgtctatagtttaatagtatctttagctgccattacagcatc 941
Query: 132 agcagtggcaccaccaccaccaccatcatcaccaccaccaccaccattaacaacaacaac 191
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 agcagtggcaccaccaccaccaccatcatcaccaccaccaccaccatt------------ 893
Query: 192 aacaacaacaacaacaacaacaacaacaacaacagaagagggacagagcaagagatcaga 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aacaacaacaacaacaacaacaacaacaacaacagaagagggacagagcaagagatcaga 833
Query: 252 aacccaaatgaaaacattacagttgataaggggaagccctatgatactcccatta----t 307
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 832 aacccaaatgaaaacattatagttgataaggggaagccctatgatactcccattattttt 773
Query: 308 tttaaaaaaaaaagtgtacaaactcataaacagtctctgcatcacctatggcttacaggc 367
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttt---aaaaaaagtgtacaaactcataaacagtctctgcatcacctatggcttacaggc 716
Query: 368 tacatccccatgttacaggcccatcatttataccagaggctctttcttgttgccaccttc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tacatccccatgttacaggcccatcatttataccagaggctctttcttgttgccaccttc 656
Query: 428 tgggctttgttcagctcttcataaaccaggctgtcagctgtcttagcagccatagcgcct 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgggctttgttcagctcttcataaaccaggctgtcagctgtcttagcagccatagcgcct 596
Query: 488 gcacgccctgttgttctgctgtctgtacactgaagccacattcctgagcactttcatcat 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcacgccctgttgttctgctgtctgtacactgaagccacattcctgagcactttcatcat 536
Query: 548 ctacctgtattaccctgggaaacacgccgcccttcgctgtgctctgagattcccaacaga 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctacctgtattaccctgggaaacacgccgcccttcgctgtgctctgagattcccaacaga 476
Query: 608 ggggttgctctcttcacactcttgaagttctggcaagcaggaagctctag 657
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggggttgctctcttcacactcttgaagttctggcaagcaggaagctctag 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 12
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_o18.g1 MSMg01no518_o18.g1 CHROMAT_FILE:
MSMg01no518_o18.g1 PHD_FILE: MSMg01no518_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:29 2005
(654 letters)
>mm_chr5_20435788_20436841
Length = 1054
Score = 1160 bits (600), Expect = 0.0
Identities = 642/656 (97%), Gaps = 3/656 (0%)
Strand = Plus / Plus
Query: 1 caagacagccagagctacatagtgagaacatgactcaaaaaaagtagttttatccttcac 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 caagacagccagagctacatagtgagaacatgactcaaaaaacgtagttttatccttcac 260
Query: 61 agtctaacctaaagcttagaataaactttctcacttgtctctcatcataactcttataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 agtctaacctaaagcttagaataaactttctcacttgtctctcatcataacccttataat 320
Query: 121 gacagcaagaattattctactgtagaatca-cacacagtttggaaagtcacacttcccat 179
||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 321 gacagcaagaattattctactgtagaa-cagcacagagtttggaaagtcacacttcccat 379
Query: 180 aagtgcaatttagaaagtgtaaaaaggtatcaagacagttactgtcaataacaacaacca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagtgcaatttagaaagtgtaaaaaggtatcaagacagttactgtcaataacaacaacca 439
Query: 240 aaaatcaggagaataaaactgggtgttcagaaacaagcccaccttacaggcagctcagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaatcaggagaataaaactgggtgttcagaaacaagcccaccttacaggcagctcagtt 499
Query: 300 ttcacaatggagacaaaagaatcttttcaacagacagcactacacctgtatagtcacatt 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 ttcacaatggagacaaaagaatcttttcaacagacagcactacacctggatagtcacatt 559
Query: 360 caaaacaaaagaggaactcctgagactcctagaaggcagcctagaagacctacatggtgt 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 caaaacaaaagaggaactcctgagactcctagaaggcagcctaggagacctacatggtgt 619
Query: 420 atgtccgtgtagggggcagggagatactgcataatggcatagtgtgccaaggaaaagaac 479
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 atgtccttgtagggggcagggagatactgcataaaggcatagtgtgccaaggaaaagaac 679
Query: 480 tgatag-ctagcctcattaacaatctttaacagccactatcaagagaacagaaaggcaaa 538
|||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgatagtctagactcattaacattctttaacagccactatcaagagaacagaaaggcaaa 739
Query: 539 ccacagaagagagatcgatctgatcaacctctactattcaatgtagactcctctcacaat 598
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 740 ccacagaagagagatagatctgatcaacctctactattcaatgtagactcctcttacaat 799
Query: 599 tcaacaaaaatgccagactttaaaatgggtcaaagacttccccataaaaactgtgc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcaacaaaaatgccagactttaaaatgggtcaaagacttccccataaaaactgtgc 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
