Query= MSMg01no519_j09.b1 MSMg01no519_j09.b1 CHROMAT_FILE:
MSMg01no519_j09.b1 PHD_FILE: MSMg01no519_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:20 2005
(630 letters)
>mm_chr5_118423387_118424415
Length = 1029
Score = 1151 bits (595), Expect = 0.0
Identities = 618/626 (98%), Gaps = 1/626 (0%)
Strand = Plus / Minus
Query: 5 gaattctgagtctcgttagaaagaccagctgtatacaaagggcatggtaaagaactcccc 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gaattctgagtcaggttagaaagaccagctgtatacaaagggcatggtaaagaactcccc 770
Query: 65 tcaattcagatgctctgggtcagaacctggggaaattctcagcagatcctgccaagctat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tcaattcagatgctctgggtcagaacctggggaaattctcagcagatcctgccaagctat 710
Query: 125 ccctggccctctatcgggccttagaaataactccgagtctctaacattgttacaaaggga 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 709 ccctggccctctatcgggccttagaaataactctgagtctctaacattgttacaaaggga 650
Query: 185 cagccgtcgcctgtccatggcttacgtcattctctctccctccagtccaagtgggtccca 244
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 649 cagccgtcgcctgtccatggcttacgtcattctctccccctccagtccaaatgggtccca 590
Query: 245 gatagctgccgtctccttcctcccactggtatcctcccaggtgcatcccattgctcagga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gatagctgccgtctccttcctcccactggtatcctcccaggtgcatcccattgctcagga 530
Query: 305 tccacattcagccaagtctcccggttctgtttgctgggcttggcctggcttctgattgct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tccacattcagccaagtctcccggttctgtttgctgggcttggcctggcttctgattgct 470
Query: 365 gccttctctctttccctgtgttttcaatgctataatctcttgatttataaccatttgcta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gccttctctctttccctgtgttttcaatgctataatctcttgatttataaccatttgcta 410
Query: 425 agcatgtgtcttcccctctggtctgaagccccttcaggaccagaagggtctctttaggat 484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agcatgtgtctt-ccctctggtctgaagccccttcaggaccagaagggtctctttaggat 351
Query: 485 tcttactttcttggcagagaccttgcatgtggcagagtcttcataatcatcacccatgga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcttactttcttggcagagaccttgcatgtggcagagtcttcataatcatcacccatgga 291
Query: 545 ctgtgtgacagttagcttttactgtcaaagtaatcacgacctanagtcactagcgagggg 604
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 290 ctgtgtgacagttagcttttactgtcaaagtaatcacggcctagagtcactagcgagggg 231
Query: 605 agtctctgtaaagaagtgtctacacg 630
||||||||||||||||||||||||||
Sbjct: 230 agtctctgtaaagaagtgtctacacg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space: 631780
Effective search space used: 631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_j09.g1 MSMg01no519_j09.g1 CHROMAT_FILE:
MSMg01no519_j09.g1 PHD_FILE: MSMg01no519_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:20 2005
(568 letters)
>mm_chr5_118272566_118273533
Length = 968
Score = 1071 bits (554), Expect = 0.0
Identities = 563/566 (99%)
Strand = Plus / Plus
Query: 1 ctactgcctatcctcaccccagaccaaccctccccacccctacaccactctgcccaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctactgcctatcctcaccccagaccaaccctccccacccctacaccactctgctcaaccc 260
Query: 61 ctggtactgagactctgtaggtatctctgtattctctctgttggagagtccatcataagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtactgagactctgtaggtatctctgtattctctctgttggagagtccatcataagc 320
Query: 121 tcaacaaagaaaggtgaaccctctggccactaggaagctaagggcaatgtgaatttgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaacaaagaaaggtgaaccctctggccactaggaagctaagggcaatgtgaatttgctg 380
Query: 181 agctggaggtgagcctgggactctgagtgtgtggaacaggacctacgccactgtctgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctggaggtgagcctgggactctgagtgtgtggaacaggacctacgccactgtctgaga 440
Query: 241 agggggacctggtgcctggaaggattatagggtttaacacatgaagagactgtgttcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggggacctggtgcctggaaggattatagggtttaacacatgaagagactgtgttcact 500
Query: 301 caagacatcaaaaggagctttttttaaaggccgggatgtggaggacatggttgagctggc 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 caagacatcaaaaggagctttttttaaaggccgggaggtggaggacatggttgagctggc 560
Query: 361 aaactctaccttgagggttttgggctcaaagaaagtgatcagaatcagttgttttgagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactctaccttgagggttttgggctcaaagaaagtgatcagaatcagttgttttgagaa 620
Query: 421 aaatcatcctgactgttgtgtggggaaagtctggataaggaggtgggggcattgcaggcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcatcctgactgttgtgtggggaaagtctggataaggaggtgggggcattgcaggcg 680
Query: 481 gtgtgggtgtggtctgtgtcaccttaattcccaagctagctctggtatttatcacagggc 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtgggtgtggtctgtgtcaccttgattcccaagctagctctggtatttatcacagggc 740
Query: 541 atgggaaggtgcaaggaatgatgggc 566
||||||||||||||||||||||||||
Sbjct: 741 atgggaaggtgcaaggaatgatgggc 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
