BAC Information

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BAC

Clone NameMSMg01-520E01
Chromosome5 (Build37)
Map Location 47,264,727 - 47,265,439
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520E01.T7 (MSMg01no520_e01.b1)MSMg01-520E01.TJ (MSMg01no520_e01.g1)
ACCAG591329AG591330
length756757
length of high quality
(start - end)
708 (49 - 756)666 (77 - 742)
definitionCHROMAT_FILE: MSMg01no520_e01.b1 PHD_FILE: MSMg01no520_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:15 2005CHROMAT_FILE: MSMg01no520_e01.g1 PHD_FILE: MSMg01no520_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTATAATTTTAAAGGTCTCATATTATGTTTGCATTTAAATA
ACTTAAAATCCTTCAAAAGTACTTGTTTCTTGCCTTGAAAATATTTGTTG
ATTGTATCTTTGTTCCAACATGCTTAAATTTTATTTTTCTAAATCAAAAA
GAGTACTAGCTGGTCTTTCAGAGGATTAAAGTTCAAGTCTCAGTATCCAC
ACAGTGACTCACAATGTCAGTTCCAGGGCATCTGACATTCTCTCCGGATG
ACTGGAGATACATGCAGGCAAAACATGTATATAGATAAAAAATAGAAATG
TTTACAAATAAAAGAACTTTATTGAGTTTGTAAAATCCAATGAGTTTAGC
AAAACCAAAAAACAATATAAAACAGACTTTTATCACTACTCTTACTGGTG
TATACTAACTCCAAGCCTGCTGGGCTAAAAGAAAATGTATTTCAAGAGTA
ATCATAATTAAGTGTCAAGAGGGATTATCTGTTTTTATTTGTTTTTCTTT
ATTTCCTGGGCAATTAAAAGGGTGGTTTTCATTAGTTTTCAGAAAACACT
GGTCTAAAAGTGCTTAAAATGCCCCAAGGGAAGAATGGATAGAAGCTACA
GAAATATGGTTAGAAAAGTAGCTTTAATCATATGACATAAAACTTTCCTA
TGGAGTTATTAGATGAGAGAGACAGGAGGAAAGAAGAGAAAGGAGAGAGA
GGAGAG
NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTATTTTCTCATGGGATACCAG
CTTGTTTTAGATAGCTTATCTGCTCTTGATTTAACTTTGGTATGTGGTAG
CTATCTAGAAAACCATCGATTTCATCTAGATTTTCCAGTTTTGTAGAGTA
TAGGCTTTTGTATTAGGATATGATGATATATTTTTTTAAATTTCCCCAGT
TTCTCTTGTTATGTCTCCCTTTTCATTTCTGATTTTTAAAATTTGGATAG
TTCCTCTTTGTGGGTTTATCTGTTTTGTTGATTCTATTCTATGTTACTTG
GCCATTTTCCCTTGCAGCTTTTAATATTCTTTTTTTTGTTGTTGTTGTTC
TGTGCATTTAGTGTTTTGATTATTATGTGATGAGAAGATTTTCTTTTCTG
GTCCCATTTATTTGGTGTCCTATAAGTTTCTTGTACCATTATGGCCATCA
CTTTCTTTAGGTTTGTTAAGTTTTCTTTTATGATTTTTGTTGAAGACATT
TTCAAGTCATTTGAGCTGGGAATCTTCATTCTCTTCTGTCCTTACTATTC
TTAGATTTGGTCTTTTCATTGTGTCCTGAATTTACTGGATGTTTTGGGTT
AGGTGCTTTTTATGTTTTGAATTTTTTTGATAGTTGTGTTAATCTCTTCT
GTGGTATCTTCTACACTTGAGATTCTCTCTTCTATCTCCTGTATCCTGTT
GGTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_e01.b1 MSMg01no520_e01.b1 CHROMAT_FILE:
MSMg01no520_e01.b1 PHD_FILE: MSMg01no520_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:15 2005
         (708 letters)



>mm_chr5_47264532_47265639
          Length = 1108

 Score = 1172 bits (606), Expect = 0.0
 Identities = 683/714 (95%), Gaps = 11/714 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctataattttaaaggtctcatattatgtttgcatttaaataacttaaaatcct 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattatctataattttaaaggtctcatattatgtttgcatttaaataacttaaaatcct 255

                                                                       
Query: 65  tcaaaagtacttgtttcttgccttgaaaatatttgttgattgtatctttgttccaacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcaaaagtacttgtttcttgccttgaaaatatttgttgattgtatctttgttccaacatg 315

                                                                       
Query: 125 cttaaattttatttttctaaatcaaaaagagtactagctggtctttcagaggattaaagt 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cttaaaatttatttttctaaatcaaaaagagtactagctggtctttcagaggattaaagt 375

                                                                       
Query: 185 tcaagtctcagtatccacacagtgactcacaa---------tgtcagttccagggcatct 235
           ||||||||||||||||||||||||||||||||         |||||||||||||||||||
Sbjct: 376 tcaagtctcagtatccacacagtgactcacaacctctgtaatgtcagttccagggcatct 435

                                                                       
Query: 236 gacattctctccggatgactggagatacatgcaggcaaaacatgtatatagataaaaaat 295
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gacattctctccagttaactggagatacatgcaggcaaaacatgtatatagataaaaaat 495

                                                                       
Query: 296 agaaatgtttacaaataaaagaactttattgagtttgtaaaatccaatgagtttagcaaa 355
           | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaaatgttcaaaaataaaagaactttattgagtttgtaaaatccaatgagtttagcaaa 555

                                                                       
Query: 356 accaaaaaacaatataaaacagacttttatcactactcttactggtgtatactaactcca 415
           ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 556 accaaaaaacattatataacagacgtttatcactactcttactggtgtatactaacttca 615

                                                                       
Query: 416 a-gcctgctgggctaaaagaaaatgtatttcaagagtaatcataattaagtgtcaagagg 474
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgcctgctgggctaaaagaaaatatatttcaagagtaatcataattaagtgtcaagagg 675

                                                                       
Query: 475 gattatctgtttttatttgtttttctttatttcctgggcaattaaaagggtggttttcat 534
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 676 gattatctgtttttatttgtttttctttatttcctgggcaattaaaagggtggttt-cat 734

                                                                       
Query: 535 tagttttcagaaaacactggtctaaaagtgcttaaaatgccccaagggaagaatggatag 594
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 735 tagttttcagaaaacacttgtctaaaagtgcttaaaatgccccaagggaagaatgggtag 794

                                                                       
Query: 595 aagctacagaaatatggttagaaaagtagctttaatcatatgacataaaactttcctatg 654
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 795 aagctacagaaatatggttagaaaaatagctttaatcacatgacataaaactttcctatg 854

                                                                 
Query: 655 gagttattagatgagagagacaggaggaaagaagagaaaggagagagaggagag 708
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 855 gagttattagatgagagagacaggaggaaagaagagagaggggagagaggagag 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)