Query= MSMg01no520_f14.b1 MSMg01no520_f14.b1 CHROMAT_FILE:
MSMg01no520_f14.b1 PHD_FILE: MSMg01no520_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:22 2005
(686 letters)
>mm_chr5_19370223_19371308
Length = 1086
Score = 1284 bits (664), Expect = 0.0
Identities = 676/680 (99%)
Strand = Plus / Plus
Query: 7 gaattccaaaagtaaattatgcccatgaaaatttgcttgaattgcaagatgctggctaaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaaaagtaaattatgcccatgaaaatttgcttgaattgcaagatgctggctaaa 266
Query: 67 attcaaaacccatttaattacatattttaatatacctaccaatcacataatttaagttca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attcaaaacccatttaattacatattttaatatacctaccaatcacataatttaagttca 326
Query: 127 tgaattatgtgataaagtttgtattacgttctggttttatgaacatcactgagatcctca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgaattatgtgataaagtttgtattacgttctggttttatgaacatcactgagatcctca 386
Query: 187 aattgttatataattaaaatactgaagatgttttttcatgtattttctaatgccaagatg 246
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 aattgttatataattaaaatactgaagatgtttttttgtgtattttctaatgccaagatg 446
Query: 247 caaaatccactcatttaaaaacaattaacaaaagaaatccattttttgatgttacaaaat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaaatccactcatttaaaaacaattaacaaaagaaatccattttttgatgttacaaaat 506
Query: 307 aaaaaaacaatacttcagtaccagaatagcttaagaggctaaacaaatttgtttttgact 366
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 507 aaaaaaacaatacttcagtaccagaatagcttgagaggctaaacaaatttgtttttgact 566
Query: 367 tgaaaaaatatatgactgtacagtactaagtattaatttttataataattagactaagtt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaaaaaatatatgactgtacagtactaagtattaatttttataataattagactaagtt 626
Query: 427 ctctgaaattaatggtctctagccaatcatagccagaactaaaatttaattgtgggacac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctctgaaattaatggtctctagccaatcatagccagaactaaaatttaattgtgggacac 686
Query: 487 tttatttttcagaatgatatagaaaacaaggttctagatttcccattttaataccacttt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttatttttcagaatgatatagaaaacaaggttctagatttcccattttaataccacttt 746
Query: 547 gatattttcaatgttatatgtaatttggaaaaatgagatttatatttagtaagatatgtg 606
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 747 gatattttcaatgttatatgtaatttggaaaaacgagatttatatttagtaagatatgtg 806
Query: 607 tgtttgtgtgcacttgcatgcttaaagaaaatgaggccataaatttaagaaagagaaaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tgtttgtgtgcacttgcatgcttaaagaaaatgaggccataaatttaagaaagagaaaaa 866
Query: 667 gaatatatataagagacatt 686
||||||||||||||||||||
Sbjct: 867 gaatatatataagagacatt 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_f14.g1 MSMg01no520_f14.g1 CHROMAT_FILE:
MSMg01no520_f14.g1 PHD_FILE: MSMg01no520_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:22 2005
(690 letters)
>mm_chr5_19506648_19507738
Length = 1091
Score = 1230 bits (636), Expect = 0.0
Identities = 678/692 (97%), Gaps = 3/692 (0%)
Strand = Plus / Minus
Query: 1 agccattgggtacaaaggttcttcatataacatgaagctggtatcgtggggcttattttt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 891 agccattgggtacaaaggttcttcatataacatgaagctggtatcatggggcttattttt 832
Query: 61 atgatgacaggtaacactgaccatatatttaatgaaggtctatcttgtttcagtgtcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atgatgacaggtaacactgaccatatatttaatgaaggtctatcttgtttcagtgtcaga 772
Query: 121 aggtccttgaacagtctctaatgagcacacatactacaatcttggaacagttacaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aggtccttgaacagtctctaatgagcacacatactacaatcttggaacagttacaaaaca 712
Query: 181 catcaagcttatgaaatagctattttcctagaataaagaaaattaagcaaggtggaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 catcaagcttatgaaatagctattttcctagaataaagaaaattaagcaaggtggaaaca 652
Query: 241 aaataatgtaaacctgttatagaagaaaaactatgaaatcaaaattatgagcaaagagtt 300
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 651 aaataatgtaagcctgttatagaagaaaacctatgaaatcaaaattatgagcaaagagtt 592
Query: 301 acattgagcttcatcataattgcaaagcagttcactcgaacctcagatgagttcgtttat 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 actttgagcttcatcataattgcaaagcagttcactcgaacctcagatgagttcgtttat 532
Query: 361 gtattctgctgttgtttgcctcttttagttagaaaggctaagtgaaaatatatgtaagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtattctgctgttgtttgcctcttttagttagaaaggctaagtgaaaatatatgtaagcc 472
Query: 421 aggcttatttgtgctgttgcttcatttgccatcaggttaaagaaataaaggttcccctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aggcttatttgtgctgttgcttcatttgccatcaggttaaagaaataaaggttcccctca 412
Query: 481 tttaaaaaaaa-tcttggtttgtagtctgtattgattcacctgaattgcaataaaacatg 539
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 411 tttaaaaaaaattcttggtttgtagtctgtattaattcaactgaattgcaataaaacatg 352
Query: 540 gctatgtt-gcagaaagtcataaggcgttgtcagtgcaggagatagttcacgattatcct 598
|||||||| | ||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 351 gctatgttag-agaaagtcataaggcattgtcagtgcagaagatagttcacaattatcct 293
Query: 599 tattaagatcagtgaacagaaatgaactaaagtcctgcttttttccctcccctttcaatt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tattaagatcagtgaacagaaatgaactaaagtcctgcttttttccctcccctttcaatt 233
Query: 659 tagagctaagttctttgttactcatgcccatg 690
|||||||||||||||||||| ||||| |||||
Sbjct: 232 tagagctaagttctttgttattcatgtccatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space: 735080
Effective search space used: 735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
