Query= MSMg01no520_f15.b1 MSMg01no520_f15.b1 CHROMAT_FILE:
MSMg01no520_f15.b1 PHD_FILE: MSMg01no520_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:22 2005
(605 letters)
>mm_chr5_150843231_150844240
Length = 1010
Score = 859 bits (444), Expect = 0.0
Identities = 551/616 (89%), Gaps = 51/616 (8%)
Strand = Plus / Plus
Query: 4 ggaatt-aaatctctttatctgccccaccacacacccgatgaatcctttaggccctgcta 62
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcaaatctctttatctgccccaccacacacccgatgaatccttgaggccctgcta 263
Query: 63 cattcttcagtttaagcggctgccccccttattttctttatgtcgaattcttt-aaaaac 121
|||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 264 cattcttcagtttaagtggctgcctcccttattttctttatgtcgaattctttaaaaaac 323
Query: 122 tagccaatcatgaaagaccatgaggtcaggaccccacccacagggaaaagacactgtcac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagccaatcatgaaagaccatgaggtcaggaccccacccacagggaaaagacactgtcac 383
Query: 182 ctgtgtgagaatgaagaccacgttcacgtccttcctggtaggctcgctcttattaaaagt 241
|||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 ctgtgtgagaataaagaccaagttcacgtccttcctggtaggcttgctcttattaaaagt 443
Query: 242 aaaactctgccttattgagacttcaaaaaaaaaaa-----cttttcactacttgaaaaaa 296
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 444 aaaactctgccttattgagacttc--aaaaaaaaaaaaaacttttcactacttgaaaaaa 501
Query: 297 taaaacggaaaacaaaaatataatttaaaaagttacaagattagtaagaaatgaaaagta 356
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 502 taaaacagaaaacaaaaatataatttaaaaagtgacaagattagtaagaaatgaaaagta 561
Query: 357 aaaattctaacaggaa--------tagcacattgcatctggagctcacttcacacacaat 408
||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 562 aaaattctaacag---cctcttcctagcacattgtatctggagctcacttcacacacaat 618
Query: 409 ggcaaatctgtgtgtttggttggattgggtctctggtttgtttttttttttttctttttt 468
||||||||||| | |||||||||||||||||||||||||
Sbjct: 619 ggcaaatctgtatctttggttggattgggtctctggttt--------------------- 657
Query: 469 cttttcttttttttttttagtttttaacagtaaagagggaacaggcagaatcaggaccag 528
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ----------tgttttttagtttttaacagtaaagagggaacaggcagaatcaggaccag 707
Query: 529 atgttctaaaatggcccctcagaggcagaccatggatgagaagaaaacccaagcttggag 588
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 708 atgttctaaaatggcccctcagaggcagaccatggatgagaagagaactcaagcttggag 767
Query: 589 caccatgtctgctgtg 604
||||||||||||||||
Sbjct: 768 caccatgtctgctgtg 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1010
Length adjustment: 10
Effective length of query: 595
Effective length of database: 1000
Effective search space: 595000
Effective search space used: 595000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_f15.g1 MSMg01no520_f15.g1 CHROMAT_FILE:
MSMg01no520_f15.g1 PHD_FILE: MSMg01no520_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:22 2005
(626 letters)
>mm_chr5_151008687_151009706
Length = 1020
Score = 984 bits (509), Expect = 0.0
Identities = 582/621 (93%), Gaps = 25/621 (4%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccctgtttgga------aaaaa----------- 43
||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 615 caggacagccagggctacacagagaaaccctgtctggagaaaacaaaaagaagaagaaga 556
Query: 44 --aaaagtaacaacattccagcaacatttcttttgagaagtcacagagagcagttcattt 101
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agaaaagtaacaacattccatcaacatttcttttgagaagtcacagagagcagttcattt 496
Query: 102 gggatggataagatgaatatgaaaaagaatatgtccacttattctttactgcattcctga 161
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 495 gggatggataagatgaatatgaaagagaatatgtccacttattctttactgcattcctga 436
Query: 162 acaatgcgtcatgtgcagtcccccacccccaccccccagcatcaagagctcagtccacta 221
|||||| |||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 435 acaatgtgtcatgtgcagt------cccccaccccccagcatcaagagcacagtccacta 382
Query: 222 acttctggtcactggacccttggtatctcacttgtattgttagcttttatttctaaggac 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttctggtcactggacccttggtatctcacttgtattgttagcttttatttctaaggac 322
Query: 282 ttaagcttccacccacccaggtccattcgctgtctctggcaggatagaattctatccctt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagcttccacccacccaggtccattcgctgtctctggcaggatagaattctatccctt 262
Query: 342 gaaaaataaaaacaggtctggagagatggctcagtagttaagaacactgactgctcttcc 401
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gaaaaataaaaacaggtctggagagatggctcagtagttaagaacacggactgctcttcc 202
Query: 402 agaggtcctgagttcaattcccagcaaccacatggtggttcacaaccatctgtaatggga 461
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 agaggtcctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaatggga 142
Query: 462 tccgatgccctcttctagtgtgtctaaagacagtgtactcatatacataaaataaataga 521
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tccgatgccctcttctagtgtatctaaagacagtgtactcatatacataaaataaataga 82
Query: 522 taaatctttttttaaaagattagaagaataagaagaataagaataagaataagaataaga 581
|||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 81 taaatctttttttaaaagattagaagaagaagaagaagaagaagaagaagaagaagaaga 22
Query: 582 ataagaagaagaagaagaaga 602
| |||||||||||||||||||
Sbjct: 21 agaagaagaagaagaagaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 25
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1020
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1010
Effective search space: 622160
Effective search space used: 622160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
