Query= MSMg01no520_h05.b1 MSMg01no520_h05.b1 CHROMAT_FILE:
MSMg01no520_h05.b1 PHD_FILE: MSMg01no520_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:30 2005
(631 letters)
>mm_chr5_48890820_48891846
Length = 1027
Score = 1131 bits (585), Expect = 0.0
Identities = 615/627 (98%), Gaps = 4/627 (0%)
Strand = Plus / Plus
Query: 5 gaattcctccatggtcctttggtgaaatctcttttctgcttttccctcagcaacggggat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctccatggtcctttggtgaaatctcttttctgcttttccctcagcaacggggat 264
Query: 65 tgtctccccgtgtttctgatgaagaccttcacaggccacttgactttacctccccctctt 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttccccgtgtttctgatgaagaccttcacaggccacttgactttacctccccctctt 324
Query: 125 ctgctactctcacctgttggttagacctttgtcttctctggaaggcagcccagtccagac 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ctgctactctcacctgttggttagacctttgtcttctctggaagacagcccagtccagac 384
Query: 185 cagggtatattccttgagctctgatattaccaagataaacttcttcgacatggaataatt 244
|||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 385 cagg----actccttgagctctgatattaccaagttaaacttcttcgacatggaataact 440
Query: 245 atgagatttctagttaataatttaatttctattttcatttcaattttctctttaaagtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagatttctagttaataatttaatttctattttcatttcaattttctctttaaagtag 500
Query: 305 gactgtaactgtgccgatctcagattcttgaagttaataactgtaattgctatgtcatgc 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gactgtaactgtgccgatctcagatacttgaagttaataactgtaattgctatgtcatgc 560
Query: 365 tatagagggaagacagtgagatcatttcttgcatagacatttagggcagggatctggctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatagagggaagacagtgagatcatttcttgcatagacatttagggcagggatctggctg 620
Query: 425 acttttctgctctcttttctttcctatcccttgccttttgccccatccccactagatatg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 acttttctgctctcttttctttcctatcccttgccttttgccccatccccaccagatatg 680
Query: 485 ttaagtttcttcttttaagcagctgctttatctcctctgacaaagtgatgactcttctcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaagtttcttcttttaagcagctgctttatctcctctgacaaagtgatgactcttctcc 740
Query: 545 aaagggctctgcagacacatgaccctccattcaatcacccgaggtttctcagccttatct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagggctctgcagacacatgaccctccattcaatcacccgaggtttctcagccttatct 800
Query: 605 aactgatgacagtgcttatgactcgcg 631
|||| ||||||||||||||||||||||
Sbjct: 801 aactcatgacagtgcttatgactcgcg 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1027
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1017
Effective search space: 631557
Effective search space used: 631557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_h05.g1 MSMg01no520_h05.g1 CHROMAT_FILE:
MSMg01no520_h05.g1 PHD_FILE: MSMg01no520_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:30 2005
(670 letters)
>mm_chr5_49023166_49024228
Length = 1063
Score = 1181 bits (611), Expect = 0.0
Identities = 651/667 (97%), Gaps = 7/667 (1%)
Strand = Plus / Minus
Query: 4 acttcagaaggaactagagactatccattacattttgtttaatgcattattatatgtgtg 63
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 863 acttcagaaggaactagagactatccattacattttgtttagtgcattattatatgtgtg 804
Query: 64 ctgtgttggtatgctcaagaaatgagtccaactttgttgctcaaatggtttaacacagac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ctgtgttggtatgctcaagaaatgagtccaactttgttgctcaaatggtttaacacagac 744
Query: 124 agcatttctgtggatatctttttcagtaatgattgtttctgttcattcattatatataca 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 743 agcatttctgtggatatctttttcagtaacgattgtttctgttcattcattatatataca 684
Query: 184 cttttttaaaaatgtgaaaactgttttggaagtgacaaaggtttgaaaattatttccaac 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctttttt--taatgtgaaaactgttttggaagtgacaaaggtttgaaaattatttccaac 626
Query: 244 tatgaattattttgtaagttgtattttctgtctgatgttccctatggatcatgtaacaca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatgaattattttgtaagttgtattttctgtctgatgttccctatggatcatgtaacac- 567
Query: 304 agactataatatgctatagtaaagtgaaaggttgccaaaattggatgcatgaaaataaag 363
||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 566 agactataatacgctatagtaaagtgataggttgccaaaaatggatgcatgaaaataaag 507
Query: 364 actgtcatctttggagattgctcaatggttagatgcacaaatatatgtgagccatccatc 423
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 506 actgtcatctttggagattgctcagtggttagatgcacaaatatatgtgag----ccatc 451
Query: 424 catctctttggaccaaaagaccaacatttccttggaaatacacacagcaccaccttctta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catctctttggaccaaaagaccaacatttccttggaaatacacacagcaccaccttctta 391
Query: 484 gcttcccaaagatgaacttgcacagacagatttttataacatcaggtgaaaggttaattg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcttcccaaagatgaacttgcacagacagatttttataacatcaggtgaaaggttaattg 331
Query: 544 tgactaagtgtcatataatatttaatatgaaaacatatgctgttttgaaatgtatgtaga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgactaagtgtcatataatatttaatatgaaaacatatgctgttttgaaatgtatgtaga 271
Query: 604 agtggaaagttcattacctgagcatgcttatatgactatacccaggtatgggactgtgct 663
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 270 agtggaaagttcattacctgagcatgcttttatgactacacccaggtatgggactgtgct 211
Query: 664 caattct 670
|||||||
Sbjct: 210 caattct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1063
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1053
Effective search space: 694980
Effective search space used: 694980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
