Query= MSMg01no520_i17.b1 MSMg01no520_i17.b1 CHROMAT_FILE:
MSMg01no520_i17.b1 PHD_FILE: MSMg01no520_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:37 2005
(649 letters)
>mm_chr5_134466971_134468019
Length = 1049
Score = 1195 bits (618), Expect = 0.0
Identities = 642/650 (98%), Gaps = 1/650 (0%)
Strand = Plus / Minus
Query: 1 cagcactgtactgcatccccagcctctctaaac-tataagcacttgttatgccccttttc 59
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1016 cagcactgtactgcatccccagcctctctaaacttataagcacttgttacgccccttttc 957
Query: 60 tggaaaggccattatgaccattttatagcttataaagactaaggcttgtgaagatctttt 119
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 956 tggaaaggccattataaccattttatagctcagaaagactaaggcttgtgaagatctttt 897
Query: 120 aagttcatagatccaataaaaggcagagacagagacagagacagggatgagatccaaatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 896 aagttcatagatccaataaaaggcagagacagagacagagacagggatgagattcaaatg 837
Query: 180 catgcccctggctcccacatcattcttcccagactcatggggataccacttcccttgtgt 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 836 catgcccctggctcccacatcattcttcccagactcatagggataccacttcccttgtgt 777
Query: 240 gctctgtggataattattttgctgaattgactcactggtattcatctctaaatccaatcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gctctgtggataattattttgctgaattgactcactggtattcatctctaaatccaatcc 717
Query: 300 ttgttccaggggccatgtgtggccagataagctcccaattaagcctctggccgcttgcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttgttccaggggccatgtgtggccagataagctcccaattaagcctctggccgcttgcct 657
Query: 360 cagtcacctcccagctgggagctccagctgggctctacacacaccattccaagcctctag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cagtcacctcccagctgggagctccagctgggctctacacacaccattccaagcctctag 597
Query: 420 gctcagtggaatctgctggctcccatctgagttccccattccccacccactttctcgaaa 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 596 gctcagtggaatctgctggctcccatttgagttccccattccccacccactttctcgaaa 537
Query: 480 ctgccagtcatgtgaattctcattaatcacttccagggaaggcaggagacaatataattg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctgccagtcatgtgaattctcattaatcacttccagggaaggcaggagacaatataattg 477
Query: 540 ctccgtgtacacctgtcaggtagacactgcatcaagagcatgtttaaggttgtttttagt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctccgtgtacacctgtcaggtagacactgcatcaagagcatgtttaaggttgtttttagt 417
Query: 600 tctgatcagagtgattgaaacagatgtacctcatgggtcttattaaacgg 649
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctgatcagagtgattgaaacagatgtacctcatgggtcttattaaacgg 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_i17.g1 MSMg01no520_i17.g1 CHROMAT_FILE:
MSMg01no520_i17.g1 PHD_FILE: MSMg01no520_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:37 2005
(586 letters)
>mm_chr5_134267430_134268415
Length = 986
Score = 1125 bits (582), Expect = 0.0
Identities = 585/586 (99%)
Strand = Plus / Plus
Query: 1 taggccaacagagtcaagtaacctgaaccctcaggggcttccagagattaaacaccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggccaacagagtcaagtaacctgaaccctcaggggcttccagagattaaacaccacca 260
Query: 61 accaaagagcaagcattggctggacctagggcccctgcacatatatagcagacatgcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaagagcaagcattggctggacctagggcccctgcacatatatagcagacatgcagc 320
Query: 121 tcggtcttcacgtgggtcccaagcaactggagctgtccctaaatctgctgcctgcctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcggtcttcacgtgggtcccaagcaactggagctgtccctaaatctgctgcctgcctgtg 380
Query: 181 aatctggttttccttaactgggccaccttgtctggcctcagagggagagaatgcacctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctggttttccttaactgggccaccttgtctggcctcagagggagagaatgcacctag 440
Query: 241 tcctgcagtgacctgatgagccaggagggcccagtggtaaggaagtagagacctgcagat 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tcctgcagtgacctgatgagccaggagggcccagtggtaaggaagtagaaacctgcagat 500
Query: 301 ccctgtggctcacaagcaagccagtctagcccaccaggacaagttgcagaccagtgagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctgtggctcacaagcaagccagtctagcccaccaggacaagttgcagaccagtgagat 560
Query: 361 agcctgtctcaaaatcactttacacacacaaacaaacaatatatgaggaatggcacctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctgtctcaaaatcactttacacacacaaacaaacaatatatgaggaatggcacctgt 620
Query: 421 gggtatcccctggcatccatccatgcaggaacacatgcatcatcaaacatgaacaagcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtatcccctggcatccatccatgcaggaacacatgcatcatcaaacatgaacaagcaa 680
Query: 481 acacatcaaaataatttcgggatgatcgccaggatatggccctcctatagtcagaatggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacatcaaaataatttcgggatgatcgccaggatatggccctcctatagtcagaatggt 740
Query: 541 tttcatgaacagagatttgagtccatatgaaagactaggaagcaat 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttcatgaacagagatttgagtccatatgaaagactaggaagcaat 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
