Query= MSMg01no520_i23.b1 MSMg01no520_i23.b1 CHROMAT_FILE:
MSMg01no520_i23.b1 PHD_FILE: MSMg01no520_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:38 2005
(670 letters)
>mm_chr5_3725520_3726589
Length = 1070
Score = 1288 bits (666), Expect = 0.0
Identities = 669/670 (99%)
Strand = Plus / Plus
Query: 1 agctctgtcatggcctttcatcttccatggacctgggtcattgacagtctgatatatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctctgtcatggcctttcatcttccatggacctgggtcattgacagtctgatatatcag 260
Query: 61 ggcagcagaaagggtcaattggtgcatttcttcacatgttgagaaatttaccattcacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagcagaaagggtcaattggtgcatttcttcacatgttgagaaatttaccattcacca 320
Query: 121 ccacacccatgcttcattaactcattgttcatgctgtagttctactctcatttctgaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacacccatgcttcattaactcattgttcatgctgtagttctactctcatttctgaatt 380
Query: 181 agtgaggcagagtcagtagcagtgaataataaaaatgtgtaactacaaagatgagaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgaggcagagtcagtagcagtgaataataaaaatgtgtaactacaaagatgagaaatt 440
Query: 241 tttctcttaaatgttttgaaaatttacctttagggcacatgaatagaacttattgctgag 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttttaaatgttttgaaaatttacctttagggcacatgaatagaacttattgctgag 500
Query: 301 aattttcttggtattttagtttttctcagtctcatttagccagaaaagtagcaatctggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattttcttggtattttagtttttctcagtctcatttagccagaaaagtagcaatctggt 560
Query: 361 attgttttaattactatatccaaactctagtaagcaaactttttctgtaaagagggaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgttttaattactatatccaaactctagtaagcaaactttttctgtaaagagggaaac 620
Query: 421 aataaatgctttacataactatgtatcaatggtctttgtgacaacacctcaattttgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataaatgctttacataactatgtatcaatggtctttgtgacaacacctcaattttgctg 680
Query: 481 tcacaacttcaaaacaaatacaaataatacataaataaactcacatagaaggtcttaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacaacttcaaaacaaatacaaataatacataaataaactcacatagaaggtcttaatt 740
Query: 541 gtgcttcaacaaaatttcacttttaaaactaggtatacgtagtactttgctgacctctaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgcttcaacaaaatttcacttttaaaactaggtatacgtagtactttgctgacctctaa 800
Query: 601 cctcccacatatttgctttaatttttaatagtaacagcaggaaacatacatgatggggta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctcccacatatttgctttaatttttaatagtaacagcaggaaacatacatgatggggta 860
Query: 661 ggggtagttc 670
||||||||||
Sbjct: 861 ggggtagttc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_i23.g1 MSMg01no520_i23.g1 CHROMAT_FILE:
MSMg01no520_i23.g1 PHD_FILE: MSMg01no520_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:38 2005
(671 letters)
>mm_chr5_3884519_3885590
Length = 1072
Score = 895 bits (463), Expect = 0.0
Identities = 488/497 (98%), Gaps = 3/497 (0%)
Strand = Plus / Minus
Query: 1 ccctaactggcagtaaaagctgggtcagcaagttcaccagagctctcccaaatggcgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 496 ccctaactggcagtaaaagctgggtcagcaagttcaccagagctctcccaaatggggaga 437
Query: 61 cccctgcatgcaggaaatacagctcatgcatgctatttcagaccttgttcttcagcaatt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cccttgcatgcaggaaatacagctcatgcatgctatttcagaccttgttcttcagcaatt 377
Query: 121 cttggacc--aacagtatgtattgtacatgcagatttctccctcgctcccctttctcatc 178
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 cttggaccctaacagtatgtattgtacgtgcagatttctccctcgctcccctttctcatc 317
Query: 179 actcccctcctgttagttcactttactctcctagacggttttgcttctagtttcatgtca 238
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 316 actcccctcctgttagttcactttactctcc-agacagttttgcttctagtttcatgtca 258
Query: 239 tctatacacatatgattttatttttctgtataaaatctctgagctacaaattggagactg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctatacacatatgattttatttttctgtataaaatctctgagctacaaattggagactg 198
Query: 299 gttcaatgcacctaatatgatcacctccagctgtatccattgtcttgaaagtgacatgaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gttcaatgcacctaatatgatcacctccagctgtatccattgtcttgaaagtgacatgaa 138
Query: 359 ctttgtatgctttatggctgaaaaatgttgattgtgtgtggataaagcatccactttact 418
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 137 ctttgtatgctttatggctgaaaaatgttgattgtgtgcggataaagcatccactttact 78
Query: 419 cacgtctctgctgttgggcacatagattggtccatgtctgtctctgctgatggacacata 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 77 cacgtctctgctgttgggcacataggttggtccatgtctgtctctgctgatggacacata 18
Query: 479 ggttgatccataatcct 495
|||||||||||||||||
Sbjct: 17 ggttgatccataatcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space: 701982
Effective search space used: 701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
