Query= MSMg01no520_k20.b1 MSMg01no520_k20.b1 CHROMAT_FILE:
MSMg01no520_k20.b1 PHD_FILE: MSMg01no520_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:47 2005
(708 letters)
>mm_chr5_84790964_84792069
Length = 1106
Score = 1263 bits (653), Expect = 0.0
Identities = 692/705 (98%), Gaps = 2/705 (0%)
Strand = Plus / Minus
Query: 4 ggaattccacagagaaaccgtacattgacccagcctgtttctcatcatccatgcaaactg 63
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 906 ggaattccacacagaaaccgtacattgacccagcctgtttttcatcatccatgcaaactg 847
Query: 64 ctctaactcttgggacagaggcaaaaaaaatagctgaactttaggtgttgcttgtgctgt 123
|||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||
Sbjct: 846 ctctaactcttgggacagaggc-aaaaacatagctgaactttagatgttgctggtgctgt 788
Query: 124 aggatctgtctcttcagtctaagtacaggagtgatttagaaaaaaatatattatctagac 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 787 aggatctgtctcttcagtctaagtacaggagtgatttagaaaaaattatattatctagac 728
Query: 184 ttcattaaaattagtgccttcaggaattaggtcaaaaaagctttgttttaagtagcaagc 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 727 ttcattaaaattagtgccttcaggaattaggtcaaaaaagctttgtttcaagtagcaagc 668
Query: 244 tgttttctatgtaaagttgatttcacttaaaaaaaatagttgtcagtgtgaaatgctttt 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 667 tgttttctatgtaaagttgatttcactt-aaaaaaatagttgtcagtgtgaaatgctttt 609
Query: 304 tcaaacatacagtgagtgaaatgagtggttctagtgtataattttaactatatctctaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcaaacatacagtgagtgaaatgagtggttctagtgtataattttaactatatctctaaa 549
Query: 364 gccggaagtatgatacatgtagattattcacagcattcgaatgttttatttgactgaacc 423
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 548 gctgggagtatgatacatgtagattattcacagcattcaaatgttttatttgactgaacc 489
Query: 424 atttagttttttagaaggattaataccaagacttctctgtctatgtatttcagatttcac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atttagttttttagaaggattaataccaagacttctctgtctatgtatttcagatttcac 429
Query: 484 aatcatcactaatcacatctatatttatcatcattcttcatttgttttcctatgatactt 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aatcaccactaatcacatctatatttatcatcattcttcatttgttttcctatgatactt 369
Query: 544 gcaaaataatattacactccgctctatatgtcattattatgagttggtataaaactaata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gcaaaataatattacactccgctctatatgtcattattatgagttggtataaaactaata 309
Query: 604 acatcctattagctcatcgtttccttagagcctgggaaagccacccttgtgattgctgac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acatcctattagctcatcgtttccttagagcctgggaaagccacccttgtgattgctgac 249
Query: 664 ctggcagtgcaagtccctgtgctgcagacaaagttgcctattgct 708
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctggcagtgcaagtccctgtgctgcagacaaagttgcctattgct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1106
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1096
Effective search space: 765008
Effective search space used: 765008
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_k20.g1 MSMg01no520_k20.g1 CHROMAT_FILE:
MSMg01no520_k20.g1 PHD_FILE: MSMg01no520_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:48 2005
(641 letters)
>mm_chr5_84623625_84624665
Length = 1041
Score = 1208 bits (625), Expect = 0.0
Identities = 637/641 (99%)
Strand = Plus / Plus
Query: 1 atttgtaagttttgataggaagttttgttgttgttgttgtagttgctgttgttgtgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgtaagttttgataggaagttttgttgttgttgttgtagttgctgttgttgtgctgg 260
Query: 61 gagtggtggtggttgtggttatgattctggttgtttgttttgttttattacagaagtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtggtggtggttgtggttatgattctggttgtttgttttgttttattacagaagtttc 320
Query: 121 agtctctgcctgtggactaaacaaatgtattggtcaagatgaggcaatgatatgaacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agtctctgcctgtggactaaacaaatgtattggtcaagatgaggcaaagatatgaacaaa 380
Query: 181 actgcagagaaaatgtatgttgggtctgaagagatgacttagagattaagagtactgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgcagagaaaatgtatgttgggtctgaagagatgacttagagattaagagtactgggt 440
Query: 241 gctgttccaaggcatgggggactcttatataccataggaactgcatgtagactgtgttca 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gctgttccaaggcatgggggactcttatgtaccataggaactgcatgtagactgtgttca 500
Query: 301 gatacacaggcatgcaacacatcaaatttttaaaatgacaaaaatgtttgttggaaccat 360
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 501 gatacacaggcatgcaacacatcaaatttttaaaaagataaaaatgtttgttggaaccat 560
Query: 361 aaaggtcttctttacagaaagtatgaaaaaatggtagattcgtgtagcagttgtggaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggtcttctttacagaaagtatgaaaaaatggtagattcgtgtagcagttgtggaatt 620
Query: 421 agaaggtatatattattattagttgaaagtgacttgctattcctcagttcctatgaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaggtatatattattattagttgaaagtgacttgctattcctcagttcctatgaatgt 680
Query: 481 tatttttctgtagataaagtctttacaaattaagagattacaaaattgtacccaagtcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttttctgtagataaagtctttacaaattaagagattacaaaattgtacccaagtcta 740
Query: 541 gaattggtatctttgcataaagatacccaaggataagtgactttggaagacaggatttat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattggtatctttgcataaagatacccaaggataagtgactttggaagacaggatttat 800
Query: 601 tcggactcaagtcaagaacgacctgaagctggaagggaagg 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcggactcaagtcaagaacgacctgaagctggaagggaagg 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
