Query= MSMg01no520_m09.b1 MSMg01no520_m09.b1 CHROMAT_FILE:
MSMg01no520_m09.b1 PHD_FILE: MSMg01no520_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:55 2005
(248 letters)
>mm_chr5_42142692_42143339
Length = 648
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%)
Strand = Plus / Plus
Query: 1 gccaagcttgatctcacccccaaaacgtctgtgctcccatcgtgagatatgcacagctcc 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gccaagcttgatctcacccccaaagcgtctgtgctcccatcgtgagatatgcacagctcc 260
Query: 61 tttttaccaatcagcgaatctgcctctcaagttgtggaaatggggctaatctgccaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttaccaatcagcgaatctgcctctcaagttgtggaaatggggctaatctgccaaact 320
Query: 121 gggcacccagcacagtgctggacgcctcaagtcactcatttagtccctaactatgcctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcacccagcacagtgctggacgcctcaagtcactcatttagtccctaactatgcctgc 380
Query: 181 ctgcctcttgtttgtttgtttgcttgcttattttaatctctgccaaaaatgctatccttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcctcttgtttgtttgtttgcttgcttattttaatctctgccaaaaatgctatccttg 440
Query: 241 tcccagaa 248
||||||||
Sbjct: 441 tcccagaa 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no520_m09.g1 MSMg01no520_m09.g1 CHROMAT_FILE:
MSMg01no520_m09.g1 PHD_FILE: MSMg01no520_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:55 2005
(660 letters)
>mm_chr5_42305585_42306648
Length = 1064
Score = 1180 bits (610), Expect = 0.0
Identities = 649/664 (97%), Gaps = 4/664 (0%)
Strand = Plus / Minus
Query: 1 catggttgatgagactcgacaccacatggatgtgagtctgttggtaaaaagaatagcagt 60
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 864 catggttaatgagactcgacaccacatgaatgtgagtctgttggtaaaaagaatagcagt 805
Query: 61 cctccctctttgattttgtttttattgtttatatgtttttatcgaggccctaatatcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctccctctttgattttgtttttattgtttatatgtttttatcgaggccctaatatcaat 745
Query: 121 aaaacacacttagcattaagtagcccagtttagtgaattttaacagttacacagcctcac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 744 aaaacacacttagcattaagtagcccagtttagtgaattttaacagttacacggcctcac 685
Query: 181 agaactctcatcttgaataagacagagcatagctcacagtcataagctcccttcctggga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggaactctcatcttgaataagacagagcatagctcacagtcataagctcccttcctggga 625
Query: 241 gaatattccttagcctggtgaaagccagaaagaattatttatcactttcctttacgcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaatattccttagcctggtgaaagccagaaagaattatttatcactttcctttacgcagt 565
Query: 301 tggagtcagattcatacctgactggtaaaacatacttcttcaaggtcctactccaactcc 360
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 564 tagagtcagattcatacctgactggtaaaacatactccttcaaggtcctactccaactcc 505
Query: 361 agctgtgccttgtaacattctatctaaaacacagaaaactctagctccctttctgtctac 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 agctgtgccttgtaacattctatctaaaacacaaaaaactctagctccctttctgtctac 445
Query: 421 cctggactattgagttatatttccctgagcgcccttgaccttctaaatgtttttatattt 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctggactattgagttttatttccctgagcgcccttgaccttctaaatgtttttatattt 385
Query: 481 cttacgtccttgctcctccactcatcttctttgttgaatagcctgtttttcagaatcgag 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttacatccttgctcctccactcatcttctttgttgaatagcctgtttttcagaatcgag 325
Query: 541 cctgaaggttcttttatagcattgcacataagttttatatattgggtatcttgtggaaag 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 cctgaaggttcttttatagcattgcacataagttttatatattggatatcttgtggaaag 265
Query: 601 tgataagctcaagagactgttatgtgccaat----gctaggtgatgttttctgcgtactt 656
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 264 tgataagctcaagagactgttatgtgccaatgctagctaggtgatgttttctgtgtactt 205
Query: 657 ggaa 660
||||
Sbjct: 204 ggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1064
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1054
Effective search space: 685100
Effective search space used: 685100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
