Query= MSMg01no520_n11.b1 MSMg01no520_n11.b1 CHROMAT_FILE:
MSMg01no520_n11.b1 PHD_FILE: MSMg01no520_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:00 2005
(667 letters)
>mm_chr5_122806213_122807283
Length = 1071
Score = 1234 bits (638), Expect = 0.0
Identities = 656/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcaaattataaatatcaaatctttataatctactcaaattataaagagtagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaaattataaatatcaaatctttataatctactcaaattataaagagtagac 264
Query: 65 agattgagaagtaaagaaacaggagttggtgtacaaagcaagaaaatatagaacgacatt 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 agattgagaagtaaagaaacaggagttggtgtacaaagcaagaaaatgtagaacgacatt 324
Query: 125 gacagtttgctgtgtgtgggtgtttgtcctgtgtttaaaaagagagtcagtagttctttt 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gacagtttgctgtgtgtgggtgtttgtcctgtgtttaaaaagagaatcagtagttctttt 384
Query: 185 ggaattatttttggcacagctgatttttaacatttcctttcataacattcagaaatcatt 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaattattttcggcacagctgatttttaacatttcctttcataacattcagaaatcatt 444
Query: 245 aacaatttttgcatatttggtatgggtttttggtttatttgtttcttttcttttaacttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaatttttgcatatttggtatgggtttttggtttatttgtttcttttcttttaacttt 504
Query: 305 tgttgctttcttttaacattggtcatgtttcaccccctttttttttccattcccctgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgttgctttcttttaacattggtcatgtttcaccccctttttttttccattcccctgtct 564
Query: 365 gcaatcaacttcttcattccactaaggctgggcacagagtaagtttttctccgctcctac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaatcaacttcttcattccactaaggctgggcacagagtaagtttttctccgctcctac 624
Query: 425 taacaatggtggttgggtggctgataactgactggatttcttactctttccagctctgtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taacaatggtggttgggtggctgataactgactggatttcttactctttccagctctgtc 684
Query: 485 aaatagggagtaatcaaatccccatgcttgtttgggtttttgcttttacatgatttttga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatagggagtaatcaaatccccatgcttgtttgggtttttgcttttacatgatttttga 744
Query: 545 caagactttggcttccagatcctttgctgcctctactgtctgtctaacctgatttgtcat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caagactttggcttccagatcctttgctgcctctactgtctgtctaacctgatttgtcat 804
Query: 605 tgtggaatttaggcaaggacactcttgacatgttatttc----ccataactttatcacca 660
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 805 tgtggaatttaggcaaggacactcttgacatgttatttctttcccataactttgtcacca 864
Query: 661 gcag 664
||||
Sbjct: 865 gcag 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1071
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1061
Effective search space: 697077
Effective search space used: 697077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_n11.g1 MSMg01no520_n11.g1 CHROMAT_FILE:
MSMg01no520_n11.g1 PHD_FILE: MSMg01no520_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:00 2005
(681 letters)
>mm_chr5_122862591_122863671
Length = 1081
Score = 1203 bits (622), Expect = 0.0
Identities = 665/682 (97%), Gaps = 8/682 (1%)
Strand = Plus / Minus
Query: 1 cagaaaagggcgtcaggacccctagaactgcaattatagccagttgtgcaccattatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cagaaaagggcgtcaggacccctagaactgcaattatagccagttgtgcaccattatatg 666
Query: 61 agtgctgagaactgaacttgggtcctctgcaaaagcaagcag-tgctcaacggttacact 119
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 665 agtgctgagaactgaacttgggtcctctgcaaaagcaagcagttgctcaactgttacact 606
Query: 120 gtttctcttgcccctcattcttcttaggcaaggaaaggggctccctgcactttaagtaag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 605 gtttctcttgcccctcattcttcttaggcaaggaaaggggctccctgcactttaagtagg 546
Query: 180 ccgtgtggcagccagcacacagtgacgtggagaagctacaacagaggcaacgggccacac 239
| | |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 545 cggcgtggcagccagcacacagtgacgtggaggagctacaacagaggcaacccgccacac 486
Query: 240 tctgggccatttccacatgcctagctgccccacatgagggaagatctctcccagatgttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctgggccatttccacatgcctagctgccccacatgagggaagatctctcccagatgttg 426
Query: 300 tttcttggccgtccttcctacaagaggaaggacacaacactgtaaactgtcccaaaggaa 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttcttggccgtccttcccacaagaggaaggacacaacactgtaaactgtcccaaaggaa 366
Query: 360 acacagcttgactcttttaagtgtcctctggagtgtatagcttcccacatggggaagaaa 419
||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 365 acacagcttgactcttttaagtgtcctctgg-----aca-ctt-ccacatggggaagaaa 313
Query: 420 cttcaggagaaagaatttgtctgaacaaacggcagggggatgaataaatcactagctttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttcaggagaaagaatttgtctgaacaaacggcagggggatgaataaatcactagctttc 253
Query: 480 cagccagctgtctctcttctcaaggaaggaaccgaacaggcagtgcttagggcttctcag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagccagctgtctctcttctcaaggaaggaaccgaacaggcagtgcttagggcttctcag 193
Query: 540 atgccccagtgacacctgtgcaagggacagacagtgacttgaggcgactttgagacaggc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atgccccagtgacacctgtgcaagggacagacagtgacttgaggcgactttgagacaggc 133
Query: 600 acaaaatgggatagcttggaccagccagaatccagttaccaaagcccacagccctctgca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acaaaatgggatagcttggaccagccagaatccagttaccaaagcccacagccctctgca 73
Query: 660 agagaccctccctgtcttgggc 681
||||||||||||||||||||||
Sbjct: 72 agagaccctccctgtcttgggc 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
