BAC Information

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BAC

Clone NameMSMg01-521G05
Chromosome5 (Build37)
Map Location 15,185,142 - 15,185,643
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521G05.T7 (MSMg01no521_g05.b1)MSMg01-521G05.TJ (MSMg01no521_g05.g1)
ACCAG592195AG592196
length739743
length of high quality
(start - end)		462 (76 - 537)502 (81 - 582)
definitionCHROMAT_FILE: MSMg01no521_g05.b1 PHD_FILE: MSMg01no521_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:43 2005CHROMAT_FILE: MSMg01no521_g05.g1 PHD_FILE: MSMg01no521_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTACATCTATAATTGCGGTGTCTAACGACTCACANATCCAGAAGAGGGGC
GGAATTCTGCACTATACCATCTAGTCCTGGGCTTTGTTTGGTTGGGAGAC
TTTTAATGACTGATTTCTTTGGCAGTTATGGGAGTGTTAGACTATTTATC
TGATCCTGGTTTCATTTTGGTACCTAGTGTCTGTCTAGAAAATTGTCCAT
TTCATCCAATTTTTTCAGTATTGTTGAGTATAGTCTTTTGTAATAGGAAA
TTATGATTTTTGAATATACTGTTTATTCTGTTGTTATTTCTCCCTTTTCA
ATTCTGATTTTGTTAATTTGGATACTGTCTCTTTGCCCTCTGGTTAGTCT
GGCTAAGGGTTTATCTATTTTGTTGCTTTCTCAAAGAACCAGCTCCCGGT
TTTATTGATTCTTTGTATAGTTCATTTGTTTCTACTTGGTTGATTTCAGC
TCTGTATTTGATTATTTCCTGACATCTACTCCTCTTGGGTGTATGTTGGG
AACAAAATAAAAGAAGGTCGGGGGTCTTGGACTGGGGCCTGGGGAGAAGT
AGGCTAAGAAATAGATGCCCACACCCCGCCATAGTTTCCCTATTCTCTGG
TTAGTCATGAATGGGAGGGCTGCTATCTACCCTATCCTTTTCTTCCCTGG
GCGGGCATTCCTCTATCTCACTCTTTCCGGGGCGGTTCAGTGGCATCCCT
GCCTTGGTTACTCCTCCCCCTTTCTACTTTTGCTAAATT

ACCCCTCGATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGAAAGAACAAGAGCC
CAAAAGGCAGAGGAGAAGTGTTCATGGGTGCACTAGCCAGTTACCTCTGG
AAGAGCAGCTGCATGGATTCAGGATGCACTTCATGCACACTGGGTGCCAT
GCTGGATGGCTGTGGAAAGTCATCTCTTACTAAGTCCTAATCAAAATGCT
TCTAGAGAACTCCACACTGAGTCAGGGCTTTCTGTTCCCAAGCAAACCAC
AGCACTGATCTCCATCTGTTTTTCTCTGACTCTTAAAACATCCTTCCAAA
TTGAAAAACAAAGCACAAAATCATCTTAATTGCCTTGCCAAAGGGTTGGA
AAGGAACACCACTTTTTGTTCAAAAGACAACTTCAGAAACCAAAAGAGAG
GCCTCAAATGGGCCAAAAGCCACAAATTGAAAAACAAAAGAAAAACAAGG
CTGGCTGTCTACTGCCAGCAGGAGTTCACCAGGGAGAGAAGCTCTGACTC
CAAAATAGTCACTTTTCCATTTTGTCAATGATGGCAAAAGGCCAAGGGTG
CTGGCTAAAGGAAGGAAAGGATGTTCCAGGAAGAAAACAGGTCTCTTTGT
TGCCAGAACTGCATTCTCACTTATAACCAATGCTGATAACTGGCAGTATA
AACTTTGGGATGGTTCCATCCTATGTGGTGACACAGGAAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_g05.g1 MSMg01no521_g05.g1 CHROMAT_FILE:
MSMg01no521_g05.g1 PHD_FILE: MSMg01no521_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:43 2005
         (502 letters)



>mm_chr5_15184942_15185843
          Length = 902

 Score =  886 bits (458), Expect = 0.0
 Identities = 491/502 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 643

                                                                       
Query: 61  ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 583

                                                                       
Query: 121 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 523

                                                                       
Query: 181 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 463

                                                                       
Query: 241 tttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 403

                                                                       
Query: 301 tgccttgccaaagggttggaaaggaacaccactttttgttcaaaagacaacttcagaaac 360
           |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| 
Sbjct: 402 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 343

                                                                       
Query: 361 caaaagagaggcctcaaatgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 420
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 283

                                                                       
Query: 421 ctggctgtctactgccagcaggagttcaccagggagagaagctctgactccaaaatagtc 480
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 282 ctggctgtctactgccagcaggcgttcaccagggagaggagctctgactccaaaatagtc 223

                                 
Query: 481 acttttccattttgtcaatgat 502
           |||||  |||||||||||||||
Sbjct: 222 actttaacattttgtcaatgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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