NNNNNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATCTTTTCTCAGGAGTTTACAAAAGCTTCTATTTGGATG
GAAGTGCACTGTACTCTTCCTTAGAAAGGTTCTATTATACAATACCTTGA
AAAACCACATGTTCTGGTGTCTACTGCCTGCCAGACATTGTGTTATTCAC
TTGGTATTCATTATCAATGCTCAGAACAATAACAATGCTACCCTCCCACA
GATGAGTTCATGGTGGCTCAAGGATGTTTGCTGACCAGCAGGAACCTGTG
CCAGTTATTGAACTCAAGTGAACATGATTCTAAGCAGCTATTGCCATGGG
AATCTTATTACAACCAGTCAATGTGTTGAGTCGAAAATCTAGAAAAGACT
AGCCACACACATGTCACAGTAACTATGTGGTAGACATCCAGTCAGGGATA
GTTTTAATTTTGAAAGCCTACCATGACAGGAAAAATAATTGCAGCCACTG
TTGACTTGAGGATCCAGAGCAGAGCCAGGCACAACACCTGCAGGAAGGTG
AACAGGTGGACTCGGCGGAGGGGGACGTGGCGCAGGTAGATGAAGTCGGG
CTGATGCTTCAAGGGCATCAGCAGCAGCTTGAGACGGTCCATGAACTGGG
AGAAATGGGGGAGAAAAAGTCGATGTGTTATCTGAAGAGTCTGNNTGAGT
GTTTCCTCTCTGCTTAGCCACCAGGAGTGATTATAGTGTATATTTCATGC
GAACAATGTCCC

TAAACCTGGAAGGGCGCGAGGGGGGAAATGAAATTTTCAAATGGCGGGAN
NNNNNANTATTCAAAAAAGGGGGTNNNNNNNNAGAGAAACCAGCGTATAA
GATCTACTTTATCCCCAATAAAAAATATTAGAGAAACCTGAAGGCTAGCT
ATTTAGGGGGGGGGAAAACTTTATGCAATAACGAGCACCTATTGGACATT
AACAGAGAAAATATATTCACTAAAAAACTCTTTCACTTTTTAAATCTCCA
CTGCAATCCTCAATTATTTTTTTTCCAATCAAATACTTCATTACTTCCCC
AAACCCCACCATCATTCCCTTACCAATTCAAATTCAATCCCTAGTCCACC
ATTGTTAACGACGTTTTCAACTTTCGTCCTTCTTTCCCTCCCCTTTTCAC
ATTTTTGTTATTTTTTAATTCCCTCGTATGATAAACCGATAAAATTTTAC
AAACCTCCTTTTCTCCCCCTCGTATTTCTACCAATATCTCCAATTTCACA
TTCCCGTTTTTTTTTCTTTTCAGAACCAATCACCATTGGTAATTTCCGAT
ACACTCAACTACATTTCCCCATTTCTTTTTCATTTTCTCTCGTTAAACAA
GCCACTCCCCTTTCCCCCTTACCCATTCGGGATACGCTTCCTCATCCACA
TTCCGTTTACTTTTTACGAGCTCTCCGATCACACTCCTACGATTACTAAT
ACACTTTTTTATTTCTCCACATTCCCCACTTTATTCAACTTTCTG

Query= MSMg01no521_k16.b1 MSMg01no521_k16.b1 CHROMAT_FILE:
MSMg01no521_k16.b1 PHD_FILE: MSMg01no521_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:04 2005
         (515 letters)



>mm_chr5_89654522_89655435
          Length = 914

 Score =  888 bits (459), Expect = 0.0
 Identities = 497/511 (97%), Gaps = 5/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcttttctcaggagtttacaaaagcttctatttggatggaagtgcactgtac 64
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 889 gaattccaccttttctcaggagtttacaaaagcttctatttggatggaagtgcactttac 830

                                                                       
Query: 65  tcttccttagaaaggttctattatacaataccttgaaaaaccacatgttctggtgtctac 124
           ||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tcttccttag--ag--tctattatacaataccttgaaaaaccacatgttctggtgtctac 774

                                                                       
Query: 125 tgcctgccagacattgtgttattcacttggtattcattatcaatgctcagaacaataaca 184
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 773 tgcctgccagacattgtgttactcacttggtattcattatcaatgctcagaacaataata 714

                                                                       
Query: 185 atgctaccctcccacagatgagttcatggtggctcaaggatgtttgctgaccagcaggaa 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 713 atgctaccctcccacagatgagttcatggtggctcaagggtgtttgctgaccagcaggaa 654

                                                                       
Query: 245 cctgtgccagttattgaactcaagtgaacatgattctaagcagctattgccatgggaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cctgtgccagttattgaactcaagtgaacatgattctaagcagctattgccatgggaatc 594

                                                                       
Query: 305 ttattacaaccagtcaatgtgttgagtcgaaaatctagaaaagactagccacacacatgt 364
           ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 593 ttattacaaccagtcaacgtgttgagtcgaaag-ctagaaaagactagccacacacatgt 535

                                                                       
Query: 365 cacagtaactatgtggtagacatccagtcagggatagttttaattttgaaagcctaccat 424
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cacagtaactatgtgatagacatccagtcagggatagttttaattttgaaagcctaccat 475

                                                                       
Query: 425 gacaggaaaaataattgcagccactgttgacttgaggatccagagcagagccaggcacaa 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aacaggaaaaataattgcagccactgttgacttgaggatccagagcagagccaggcacaa 415

                                          
Query: 485 cacctgcaggaaggtgaacaggtggactcgg 515
           |||||||||||||||||||||||||||||||
Sbjct: 414 cacctgcaggaaggtgaacaggtggactcgg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space:   456520
Effective search space used:   456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)