Query= MSMg01no522_d08.b1 MSMg01no522_d08.b1 CHROMAT_FILE:
MSMg01no522_d08.b1 PHD_FILE: MSMg01no522_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:45 2005
(676 letters)
>mm_chr5_42837930_42839005
Length = 1076
Score = 1284 bits (664), Expect = 0.0
Identities = 670/672 (99%)
Strand = Plus / Plus
Query: 5 gaattcagagtctctgtcccaaattaacaccgtcttgtgagtttcttaagttgtggttct 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagtctctgtcccaaattaacaccatcttgtgagtttcttaagttgtggttct 264
Query: 65 ggaagtcacattcctttttaatctaataagttacatttccactaaaacatttgaaacaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaagtcacattcctttttaatctaataagttacatttccactaaaacatttgaaacaaa 324
Query: 125 gtaatgagatgccatatggaaattttagttatttaaaatgaaattggaagatgacagagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaatgagatgccatatggaaattttagttatttaaaatgaaattggaagatgacagagg 384
Query: 185 ccttgactttattatgtgtatctttagcttacaatggtttggttatgatattccatcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttgactttattatgtgtatctttagcttacaatggtttggttatgatattccatcttt 444
Query: 245 gggatgtgtcaaaagggatgcacattaattacaaactgcatacctttcagtatattccat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggatgtgtcaaaagggatgcacattaattacaaactgcatacctttcagtatattccat 504
Query: 305 aacacacatgaaatcatcaatgggttctaataaatagcatttatgttatatagcgtgcct 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacacacatgaaattatcaatgggttctaataaatagcatttatgttatatagcgtgcct 564
Query: 365 cattctctgactaaatatgatagtgtttaaagcagtgttactaaatgggcttttgactta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cattctctgactaaatatgatagtgtttaaagcagtgttactaaatgggcttttgactta 624
Query: 425 taataatttaaaattacaattgatatgagtcacttaaacctcttctaaagcgaatcatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taataatttaaaattacaattgatatgagtcacttaaacctcttctaaagcgaatcatga 684
Query: 485 gtggttgaatctatcactaataatactaaatatgaagcaaaaatatggttcctctgaaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggttgaatctatcactaataatactaaatatgaagcaaaaatatggttcctctgaaag 744
Query: 545 atacatagagatttgtaacatctttataaacagtgtctaaaaccaacttaactgctaaag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atacatagagatttgtaacatctttataaacagtgtctaaaaccaacttaactgctaaag 804
Query: 605 agtgcggcatactcattcagtagaatactaccagcaataaaaaagcaatgtactctggag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agtgcggcatactcattcagtagaatactaccagcaataaaaaagcaatgtactctggag 864
Query: 665 aaacataactta 676
||||||||||||
Sbjct: 865 aaacataactta 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_d08.g1 MSMg01no522_d08.g1 CHROMAT_FILE:
MSMg01no522_d08.g1 PHD_FILE: MSMg01no522_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:45 2005
(647 letters)
>mm_chr5_42988292_42989338
Length = 1047
Score = 951 bits (492), Expect = 0.0
Identities = 558/596 (93%), Gaps = 25/596 (4%)
Strand = Plus / Minus
Query: 1 tcagttcagatttaacacttggacacaagtacccaaactaaattgcagattaacttactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 571 tcagttcagatttaacacttggacacaagtacccaaactaaattgcagattaactaactt 512
Query: 61 tctatataagaatacttccaagaatgtgtgaagcattggttgatagagtagtcaggagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tctatataagaatacttccaagaatgtgtgaagcattggttgatagagtagtcaggagaa 452
Query: 121 ctggcttccaaaacttttcaagacatttattaaaacagtttttgtaacacattttactat 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctggcttccaaaacttctcaagacatttattaaaacagtttttgtaacacattttactat 392
Query: 181 atctactgattcacagagaatttgaggagagaaagttggtatcagatctcaaatctatgc 240
||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 391 atctactgattcaaagagaattcgaggagggaaagttggtatcagatctcaaatctatgc 332
Query: 241 ctgtgatccccgagtcccaggacaccatctcagagtcatgttattgttccctcgtgatgt 300
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 331 ctgtgatccctgagtcccaggacagcatctcagagtcatgttattgttccctcatgatgt 272
Query: 301 tatttgttttcttttatctttattttgaagataaccacttggactaaactaattttgtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tatttgttttcttttatctttattttgaagataaccacttggactaaactaattttgtca 212
Query: 361 ttacatgaaggaaataaaataaaataaaataaaataaaataaaataaaataaaataaaag 420
||| ||||||| ||||||||||||||||||||||||
Sbjct: 211 ttatatgaagg-------------------------aaataaaataaaataaaataaaag 177
Query: 421 gaatccttacagctttgcttttaagtgcgtgaccttaaataaatcacataacttccctta 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 176 gaatccttacagctttgcttttaagtgcgtgaccttgaataaatcacataacttccctta 117
Query: 481 agtcatgagaaccattttttataaggatgcatagctatgtaaagtgcctgtctaacattt 540
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 116 agtcatgagaacctttttttataaggatgcatagctatataaagtgcctgtctaacatat 57
Query: 541 tcaagggaatttctttggactgctgtgacatgaaacatccagttatgcacaatcca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tcaagggaatttctttggactgctgtgacatgaaacatccagttatgcacaatcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
