Query= MSMg01no522_m15.b1 MSMg01no522_m15.b1 CHROMAT_FILE:
MSMg01no522_m15.b1 PHD_FILE: MSMg01no522_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:29 2005
(509 letters)
>mm_chr5_89589377_89590285
Length = 909
Score = 812 bits (420), Expect = 0.0
Identities = 459/484 (94%), Gaps = 20/484 (4%)
Strand = Plus / Minus
Query: 5 gaattcttttactatcagtgcatgttgtgatgaaagaccagccttgtgttgttcttagag 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattcttttactaggagtgcatgttgtgatgaaagaccagccttgtgttgttcttagag 424
Query: 65 atcttagttgagctggatgtgcaactctccctaagatgctctctccttacttaacgctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atcttagttgagctggatgtgcaactctccctaagatgctctctccttacttaacgctcc 364
Query: 125 ttcatttcactcttcagaagtaaggcgtttatggcgagtctttgcagtctgctatcacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttcatttcactcttcagaagtaaggcgtttatggcgagtctttgcagtctgctatcacag 304
Query: 185 ctataaaggctatgggaaagttgggcaggaactatataaaattgagtaggaactatatag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctataaaggctatgggaaagttgggcaggaactatataaaattgagtaggaactatatag 244
Query: 245 tcatgtagttcttttgttattttccttcctttttttttttttt----------------- 287
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcatgtagttcttttgttattttccttccttttttttttttttttttttttttttttttt 184
Query: 288 --ggtttttttcgaggcagggtttctctgtgtagccttggctgtcctggaactcactctg 345
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttggtttttt-cgaggcagggtttctctgtgtagccttggctgtcctggaactcactctg 125
Query: 346 taaaccaggctggcatcaaactcagaaatccgcctgcctctgcctcccaagtgctgggat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 taaaccaggctggcatcaaactcagaaatccgcctgcctctgcctcccaagtgctgggat 65
Query: 406 taaaggtgtgcgccaccacacccggctccatcctttctttttaaaaactagaatatcaca 465
|||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 64 taaaggcgtgcgccaccacaccgggctccatcctttctttttaaaaactaggatatcaca 5
Query: 466 gtgt 469
||||
Sbjct: 4 gtgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_m15.g1 MSMg01no522_m15.g1 CHROMAT_FILE:
MSMg01no522_m15.g1 PHD_FILE: MSMg01no522_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:29 2005
(623 letters)
>mm_chr5_89447478_89448500
Length = 1023
Score = 1174 bits (607), Expect = 0.0
Identities = 619/623 (99%)
Strand = Plus / Plus
Query: 1 ttctttactccccttcatcctgtggttcgaaatctggtttcaccagattatggactttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttactccccttcatcctgtggttcgaaatctggtttcaccagattatggactttgc 260
Query: 61 tcaagagaaggagtaaagtccagcagtcctcatttaacccacagaagggaatttgcatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagagaaggagtaaagtccagcagtcctcatttaacccacagaagggaatttgcatgg 320
Query: 121 agtcttgcccttcgcagaatgaattgctcgttatggccattattcctattaggaacagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcttgcccttcgcagaatgaattgctcgttatggccattattcctattaggaacagta 380
Query: 181 ttttttcggtagccctcagggtggccacagtgggatgcctcccagtctgagaataaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttcggtagccctcagggtggccacagtgggatgcctcccagtctgagaataaaggg 440
Query: 241 cacattcacaaattgtttttggtggataatgaaccaaatgttcaattaacttacttactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacattcacaaattgtttttggtggataatgaaccaaatgttcaattaacttacttactt 500
Query: 301 taggactatttcatatgccagggtgatttttgcctcttctgaaatctaatctgtttctgt 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggactatttcatatgccagagtgatttttgcctcttctgaaatctaatctgtttctgt 560
Query: 361 ctgggctgcatgcatggcaccctgaccatgtttttcttatgattagtctcatttgaaaag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggctgcatgcatggcaccctgaccatgtttttcttatgattagtctcatttgaaaaa 620
Query: 421 catcagcatggtggctaagaagtgggcttggactagcatggggtgggagtgtgagttcat 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcagcatggcagctaagaagtgggcttggactagcatggggtgggagtgtgagttcat 680
Query: 481 atcagtgacttgtgtgatcttggaaaagtcctttctcgtcttaaaactgtttccttgtga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcagtgacttgtgtgatcttggaaaagtcctttctcgtcttaaaactgtttccttgtga 740
Query: 541 atgatataggctcatataaagtggttaatttaattcataacacctggcacagtgtaactg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgatataggctcatataaagtggttaatttaattcataacacctggcacagtgtaactg 800
Query: 601 ttacctagtcacataacacccgg 623
|||||||||||||||||||||||
Sbjct: 801 ttacctagtcacataacacccgg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
