Query= MSMg01no522_o19.b1 MSMg01no522_o19.b1 CHROMAT_FILE:
MSMg01no522_o19.b1 PHD_FILE: MSMg01no522_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:40 2005
(619 letters)
>mm_chr5_140198807_140199825
Length = 1019
Score = 1116 bits (577), Expect = 0.0
Identities = 611/631 (96%), Gaps = 16/631 (2%)
Strand = Plus / Minus
Query: 5 gaattcagtcttagaagcagtgctgtcctcaccgccggggaaactcgggtcccaagggaa 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 701 gaattcagtcttagaagcagtgctgtcctcaccgccagggaaactcgggtcccaagggaa 642
Query: 65 gtggcctgccagaggcagatgctaagaaacaggtcacagtgtccggtcagagacccttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gtggcctgccagaggcagatgctaagaaacaggtcacagtgtccggtcagagacccttcc 582
Query: 125 tctgtgccaggaagcttccccatcaatttaggtcactcaagtggcggcagctgtctcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tctgtgccaggaagcttccccatcaatttaggtcactcaagtggcggcagctgtctcctg 522
Query: 185 ggacccgcagaccgcaagtggatggacagacagtcactctttaaccagcttcccctggga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggacccgcagaccgcaagtggatggacagacagtcactctttaaccagcttcccctggga 462
Query: 245 tgccagcaggctctggctgacctctcttgtcaacacggggctaggcaaagcagctttcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgccagcaggctctggctgacctctcttgtcaacacggggctaggcaaagcagctttcag 402
Query: 305 gtgggctgtgttgtgtcatgttggggcatgtcagggcttgttatggcatgatcgtggagt 364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtgggccgtgttgtgtcatgttggggcatgtcagggcttgttatggcatgatcgtggagt 342
Query: 365 ctggagcccattgggtaccgggtgggtgccttctactgtccaggctgcttggggccctac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctggagcccattgggtaccgggtgggtgccttctactgtccaggctgcttggggccctac 282
Query: 425 cttgggtacttcctaggaccttgtggtcgcatgtggactcgtttctgaagccctccagag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cttgggtacttcctaggaccttgtggtcgcatgtggactcgtttctgaagccctccagag 222
Query: 485 gactagtgagggcttct--t---------ttca-----ttccacgaatgaaagatggaat 528
||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 221 gactagtgagggcttctggtgagcaccaagtcatacctttccacgaatgaaagatggaat 162
Query: 529 ggttggccctgcctccttgctgagtgtccttcctgtgacctgaagcctctctgcagtcac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ggttggccctgcctccttgctgagtgtccttcctgtgacctgaagcctctctgcagtcac 102
Query: 589 agtgtctagcccacagcgcctgtgagcatct 619
|||||||||||||||| ||||||||||||||
Sbjct: 101 agtgtctagcccacagtgcctgtgagcatct 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_o19.g1 MSMg01no522_o19.g1 CHROMAT_FILE:
MSMg01no522_o19.g1 PHD_FILE: MSMg01no522_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:40 2005
(525 letters)
>mm_chr5_140077637_140078560
Length = 924
Score = 934 bits (483), Expect = 0.0
Identities = 515/526 (97%), Gaps = 3/526 (0%)
Strand = Plus / Plus
Query: 1 ttacctagcacacaaaaagcctcaggttcaatcaaaagcacacaaacggggctgggggga 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttacctagcacacaaaaagcctcaggttcaatccaaagcacacaaacggggctgggggga 260
Query: 61 gggtgggtgtggaccttgtagggggagctgctaggtagccctcagtggccagagcttaca 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgggtgtggacctcgtagggggagctgctaggtagccctcagtggccagagcttaca 320
Query: 121 gggttcagaagtttggagagacacataatggcaggcattttctcttgtatttttggttgt 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gggttcagaagtttggagagacacataatggcaggtattttctcttgtatttttggttgt 380
Query: 181 gagcctaggctttaatggctgagccatcatctctccagctccacaggcattttctcaccc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtctaggctttaatggctgagccatcatctctccagctccacaggcattttctcaccc 440
Query: 241 atgcgccttctgcaagcatggtgcatcttctatggcagaggttctagagcctctgtgaag 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 atgcgccttctgcaagcatggtgcatcttctatggcagaggttctagaacctctgtgaag 500
Query: 301 acccagctcagacagcagctgctcagtcaggggtctctgggctggggtctttatctgaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccagctcagacagcagctgctcagtcaggggtctctgggctggggtctttatctgaag 560
Query: 361 cctgtggtgtgtgtgccacacctttccacaccaggtccctcactctcaacagcccagaac 420
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 561 cctgtggtgtgtgtgccacacctttccacgccaggtccctcactctcaacagcccaga-c 619
Query: 421 atcaactccattcacagtagagattgacagttgtcctaatttgcttttttgcttgtttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atcaactccattcacagtagagattgacagttgtcctaatttgcttttttgcttgtttgt 679
Query: 481 ttgtttgctggtgatca-caccatgaccaanagcaacttggggagg 525
|||||||||| | |||| |||||||||||| |||||||||||||||
Sbjct: 680 ttgtttgctg-taatcaacaccatgaccaaaagcaacttggggagg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
