BAC Information

Click to search

BAC

Clone NameMSMg01-523G14
Chromosome5 (Build37)
Map Location 130,082,146 - 130,082,491
singlet/doubletsinglet
Overlap genenone
Upstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355, Sfrs8
Downstream geneMmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523G14.T7 (MSMg01no523_g14.b1)MSMg01-523G14.TJ (MSMg01no523_g14.g1)
ACCAG593736AG593737
length861744
length of high quality
(start - end)
239 (64 - 302)346 (60 - 405)
definitionCHROMAT_FILE: MSMg01no523_g14.b1 PHD_FILE: MSMg01no523_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:19 2005CHROMAT_FILE: MSMg01no523_g14.g1 PHD_FILE: MSMg01no523_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTAATTTTTGGGCGCTATACGACTCACTTTTCGAGAGGATCCGCGGAA
TTCTTCAATTACTAAGGACCGGGACTTAAGAGACCTCTCAGTGGTTAGAG
CACTGGCTGCTCCTGCAGAGGACTCAGGTCGATTCCCAGCATCCACATGG
TGGCTCACAACAGTCTCTAACTCCAGTTCTAGATCTGGCTCCCTCTTCTG
GCCTCTGCAGGTATCAGGCACACATGTGGTACCTAGATGTGCAGACAGGC
AAAAACACCCATGCACATTTAGAGAGGGAGAGGGGGAGGGGGAGGAGAGG
TATTATTTTTTTTTTTTTTTCGGTGGTTATATTTTGTGTATTTACCTATT
GGTATTTATTTATCGCTGTTATCACCATTGGCGCGCTTTAGTACTTTTTG
CTTCTCCCTTTATTTAGTCCCCCCTCATTTCCTCTTTTTTTTATGTCTAT
TCTTTTTTATTATTATCCATGTTTTATTTCTCTCACCCTCCTTTTTTTTT
TATTCTTCCGCGTTCTTTTTCATCACTCTTTTTAGTTGGCCCCTCCTCTT
TCTCTTTACTTATCTTATTGCGGTACATTCGTTATGATTCTTATCATTAT
TTCTTTTCCTTTCGCCCTCATGTATTTTACTCGTTCCCTTATTTTCGATC
TTGCGTCTATATTATACTTGATCATCACCAGCATAACCTAATGTTTATTC
ATTCATTTTTTATCCATTATTTCGGCATTTATGTGACTGCTCTTTTTCTT
TATCATCCTTTGCTTTTTCGCTCTAACATCCTTATTCTCTTTTAACACTC
CTGTCGCAGTATATTTATCTGTATATAGTACTCTTTTTTTACCTATATGC
TCTTTCGCACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACCATGTGAGATCTTGTCACACAAAACAAAACAAAAACTCA
AAGATTTAATAAATGGTTCTCACAACTGCGTTTCTCCTAATATTGCCAGT
CCAAAGATTTTATCCAGGCAGGACATGATGTTTAGTGACTATTTCCTCCT
AGCTGTTCAAGATTTGGGACGAGGGGCTATCTGGTGCAGTGCTGCTAGTT
AGGATTTGGCTCATATTTTTCTAACCATCAGTCCATGGCTGGGTTTTTTC
TGAGGTGGACTGCCACGTCAATCATGGCGAAGTTTATATTCCCTTAAGCT
GTGACTTAGCCAGATACCGGAGAAACACACCTTTAATCCCAGCACTGGGG
AGGCATAGGCTGGTAGATCTCTTAATCTGAGGCCAGCTTGGTCTACATAG
GGAGTTCCAGGACAGTCTGGGCTACTCAGAGAATCTGGCCTATGAAGGGA
TTGGGAAATAATTCGGGACTTACCCTGGAGGGTTATGCCTTTGTTGTCTG
ATGCTTTTCATTCAACCCGTTTTATCCCTTTTGTAGGAGATGGTGCAAAT
TTTCCCATATGGTGCAATCCTCGCCCACTTATGTTCGAGCTGGGAATTTA
GTTCCCCAGTGTTTCCTACGTGTAATTCGCTGTCTCATTGTTGTCCGTAT
TTGCGCCTAACACATGTTTCTTCGTCTTTTTTTCGTCGCCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_g14.g1 MSMg01no523_g14.g1 CHROMAT_FILE:
MSMg01no523_g14.g1 PHD_FILE: MSMg01no523_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:19 2005
         (346 letters)



>mm_chr5_130081994_130082739
          Length = 746

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatgtgagatcttgtcacacaaaacaaaacaaaaactcaaagatttaataaatggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 accatgtgagatcttgtcacacaaaacaaaacaaaaactcaaagatttaataaatggttc 439

                                                                       
Query: 61  tcacaactgcgtttctcctaatattgccagtccaaagattttatccaggcaggacatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcacaactgcgtttctcctaatattgccagtccaaagattttatccaggcaggacatgat 379

                                                                       
Query: 121 gtttagtgactatttcctcctagctgttcaagatttgggacgaggggctatctggtgcag 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtttagtgactatttcctcctggctgttcaagatttgggacgaggggctatctggtgcag 319

                                                                       
Query: 181 tgctgctagttaggatttggctcatatttttctaaccatcagtccatggctgggtttttt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgctgctagttaggacttggctcatatttttctaaccatcagtccatggctgggtttttt 259

                                                                       
Query: 241 ctgaggtggactgccacgtcaatcatggcgaagtttatattcccttaagctgtgacttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgaggtggactgccacgtcaatcatggcgaagtttatattcccttaagctgtgacttag 199

                                                         
Query: 301 ccagataccggagaaacacacctttaatcccagcactggggaggca 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccagataccggagaaacacacctttaatcccagcactggggaggca 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)