Query= MSMg01no523_j01.b1 MSMg01no523_j01.b1 CHROMAT_FILE:
MSMg01no523_j01.b1 PHD_FILE: MSMg01no523_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:31 2005
(129 letters)
>mm_chr5_64301476_64302004
Length = 529
Score = 242 bits (125), Expect = 7e-69
Identities = 128/129 (99%)
Strand = Plus / Minus
Query: 1 cctgctcccgtcagcctgccccctgtcattctctggtcacttagaagacacagagactat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctgctcccgtcagcctgccccctgtcattctctggtcacttagaagacacagagactat 270
Query: 61 gactgttgttatggacttaatctaaacagctggcttttagtctgattcagtaaaagggaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 269 gactgttgttatggacttaatctaaacagctggcttttagtctgattgagtaaaagggaa 210
Query: 121 aatggttta 129
|||||||||
Sbjct: 209 aatggttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space: 63041
Effective search space used: 63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no523_j01.g1 MSMg01no523_j01.g1 CHROMAT_FILE:
MSMg01no523_j01.g1 PHD_FILE: MSMg01no523_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:31 2005
(585 letters)
>mm_chr5_64131761_64132744
Length = 984
Score = 1023 bits (529), Expect = 0.0
Identities = 571/585 (97%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 1 tggaagtcccagtctctcttcatcaatcttttttgttacagacaccctggtagatagata 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaagtcccagtctctcctcatcaatcttttttgttacagacaccctggtagatagata 260
Query: 61 attgtgatcttaccttggctttaactggagtttccctgataatgaataatacaagtatct 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtgatcttaccttggctttgactggagtttccctgataatgaataatacaagtatct 320
Query: 121 tttatgattatctgaaatgtgtatatactctttggagaaggatctactcagattctctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgattatctgaaatgtgtatatactctttggagaaggatctactcagattctctgt 380
Query: 181 ccatatttaattattatttttctattattatagagtcatcaacattctctatgtatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatatttaattattatttttctattattatagagtcatcaacattctctatgtatatat 440
Query: 241 tttgatgtactgatttataacttcttccactgtgttattattacctccatatctttgctg 300
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tttgatgttctgatttataacttcttccactgtgttattattacctccatgtctttgctg 500
Query: 301 tctactcttgtttacgttggcatatagttgttgtacacagtattgagtttcctaaggaca 360
||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct: 501 tctactcttgtttacattggcctatagttgttgtatacagtattgagttccctaaggaca 560
Query: 361 ttaccatgcaaccacctgatatattggaacacattccccttatgctcccatcctcctctt 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ttaccatgcaaccacctgatatattggaacacattccccttacgctcccatcctcctctt 620
Query: 421 tgttccccatccctccccatcagtcctttccaccccctaaatagctttgcttctactttc 480
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 621 tgttccccatccctccccatcagtcctctccatcccctaaatagctttgcttctactttc 680
Query: 481 tcagtcagatatacagcgtgtgatttttctgtatctataacaataattaagtggtcagca 540
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 tc-gtcagatatacagcgtgtgatttttctttatctataacaataattaagtggtcagca 739
Query: 541 agatggctttgcagggagagacactttctgggcaagcttggcagc 585
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 740 agatggctttgcagggagaggcactttctgggcaagcttggcagc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
