BAC Information

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BAC

Clone NameMSMg01-523K21
Chromosome5 (Build37)
Map Location 14,463,831 - 14,464,512
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523K21.T7 (MSMg01no523_k21.b1)MSMg01-523K21.TJ (MSMg01no523_k21.g1)
ACCAG593939AG593940
length764771
length of high quality
(start - end)		408 (42 - 449)680 (74 - 753)
definitionCHROMAT_FILE: MSMg01no523_k21.b1 PHD_FILE: MSMg01no523_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:40 2005CHROMAT_FILE: MSMg01no523_k21.g1 PHD_FILE: MSMg01no523_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCATTTCCGAGCCCCATTTTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTACTGACGGTGTCTTTTGCCTTGCAGGAGTTTCATTAGGTCCCATT
TGTCAATTCTTGATCTTACAGTACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACATTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACAC
GATAACAACCAGTTATGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACTATAGCTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTAGTCTACTTGTCTG
TCTATATACCATTACCATGCAGTTTTTATCACAAGCGCTCTGTATTAAAG
CTTTATGTCAGGCATGGTGATTCCACCATATGTTCTTTTATCCTTGAGAA
GAGTCTTTGCTTTCCTATGTTTTTTGTTATTCCAGATGAATTTGCCAATT
GCTCCTTCTAATTC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTCATGTATAGAAAAATAATTGGTT
TTGCCCGAAATTCAGCATCATTGCATGAAAATTTAGCAAAAGAATTGGGC
TTCATTATTCCTTTAGACAATGTGAAAAGCTCTATTACTCATGAAATTAA
AAGTATATAAATTATTTTGGAGTTATTTTGATATATTAAAATCATTACTG
TATTAATTTTTAAATAAAAATGAAGAGGAGAAGAGAAAAACTAAGCTTAT
ATGTTCTTATGGATTTGGAATAAGTACCAGGGACCAGGGTTCTAATTTCT
GTTCATTCTCTACCTGTTTTAGCCCTTATGTCATGTGCTGGAAATTCAGC
TCTATGTTGATAAATTCTATGTGGTTGAGTAATTGCAATAGAAAAAAAAA
CACAAGAGAAAGAGGATTTAAAAAAAAAGGTTCAATCAACAGAACTGGTG
TGCATATGCATTGAGACATAAAATTATGCTTCTAGTTAGTGACATATCAT
GCATATATCTATGAGTGTAAAGTGGAGATTTTTAGTAGCTTTTGGTGCTT
TCTGTTGTGTGGAGCAGCCTTTCATTCCTTACTAAGGAACTCTTGTATTA
TTCTGGGACACAGATGTGTAAAACAACGTATCTGAAACCAGGAATCTGGT
GTACCTAGCCCTCTTCTTTTGTTATCTGGCTCCAATAACTTCTGTGCTTG
GGATTGTTGATTAGGTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_k21.g1 MSMg01no523_k21.g1 CHROMAT_FILE:
MSMg01no523_k21.g1 PHD_FILE: MSMg01no523_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:40 2005
         (680 letters)



>mm_chr5_14463631_14464710
          Length = 1080

 Score = 1237 bits (640), Expect = 0.0
 Identities = 671/682 (98%), Gaps = 2/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcatgtatagaaaaataattggttttgcccgaaattcagcatcattgcatgaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcatgtatagaaaaataattggttttgcccgaaattcagcatcattgcatgaaaatt 260

                                                                       
Query: 61  tagcaaaagaattgggcttcattattcctttagacaatgtgaaaagctctattactcatg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcaaaagaattgggtttcattattcctttagacaatgtgaaaagctctattactcatg 320

                                                                       
Query: 121 aaattaaaagtatataaattattttggagttattttgatatattaaaatcattactgtat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattaaaagtatataaatcattttggagttattttgatatattaaaatcattactgtat 380

                                                                       
Query: 181 taatttttaaataaaaatgaagaggagaagagaaaaactaagcttatatgttcttatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttttaaataaaaatgaagaggagaagagaaaaactaagcttatatgttcttatgga 440

                                                                       
Query: 241 tttggaataagtaccagggaccagggttctaatttctgttcattctctacctgttttagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggaataagtaccagggaccagggttctaatttctgttcattctctacctgttttagc 500

                                                                       
Query: 301 ccttatgtcatgtgctggaaattcagctctatgttgataaattctatgtggttgagtaat 360
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ccttatgtcatgtgctgtaaattcagctctatggtgataaattctatgtggttgagtaat 560

                                                                       
Query: 361 tgcaatagaaaaaaaaac--acaagagaaagaggatttaaaaaaaaaggttcaatcaaca 418
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tgcaatagaaaaaaaaacccacaagagaaagaggatttaaaaaaaaaggttcagtcaaca 620

                                                                       
Query: 419 gaactggtgtgcatatgcattgagacataaaattatgcttctagttagtgacatatcatg 478
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 gaactggtgtgcatatgcattgagacatgaaattatgcttctagttagtgacatatcatg 680

                                                                       
Query: 479 catatatctatgagtgtaaagtggagatttttagtagcttttggtgctttctgttgtgtg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catatatctatgagtgtaaagtggagatttttagtagcttttggtgctttctgttgtgtg 740

                                                                       
Query: 539 gagcagcctttcattccttactaaggaactcttgtattattctgggacacagatgtgtaa 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 gagcagcctttcattccttactaaggaactcttgtattattctgggacacagatatgtaa 800

                                                                       
Query: 599 aacaacgtatctgaaaccaggaatctggtgtacctagccctcttcttttgttatctggct 658
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aacaatgtatttgaaaccaggaatctggtgtacctagccctcttcttttgttatctggct 860

                                 
Query: 659 ccaataacttctgtgcttggga 680
           ||||||||||||||||||||||
Sbjct: 861 ccaataacttctgtgcttggga 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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