BAC Information

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BAC

Clone NameMSMg01-523N05
Chromosome5 (Build37)
Map Location 22,241,973 - 22,242,552
singlet/doubletsinglet
Overlap genenone
Upstream genePmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174
Downstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523N05.T7 (MSMg01no523_n05.b1)MSMg01-523N05.TJ (MSMg01no523_n05.g1)
ACCAG594048AG594049
length740795
length of high quality
(start - end)		584 (50 - 633)77 (74 - 150)
definitionCHROMAT_FILE: MSMg01no523_n05.b1 PHD_FILE: MSMg01no523_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:53 2005CHROMAT_FILE: MSMg01no523_n05.g1 PHD_FILE: MSMg01no523_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGAATTTACCATCTTTCCCTTTAAGATTTCAAATGGGCTGG
AGAGATGGCTCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCATCCT
CATGGTGGCTCACAACCATCTATAATAGAATCTGACACCCTCTTCTGATG
TGTCTGAAGACAGCTACAGTGTACTCATATACATAAATAAAATAAATCTT
TTTTTAAAAGTTTAAAACAGTATTATGTGGCCTATTGACTTCTTGGCTTC
TCTTGGGCATACATGACCTCTCTGTTATAAAATGGTAATTTTTCTGAAGC
TAGGCTCTAGTTTAGCTTAGTTTTAAGACTTTTGTCTTTAACCGTTTCAT
TAAGATGTATATAGCTATGCTTTTCTTTGAGTAATCATACTGTTAAGCTT
CTTGAATCTTTCAATTTATGCCTGTCATCAAATTTGGGTTTATTTTTTAA
ACTCATTTTTATTTTTTCAAAATGTGGTTTTTTTTGGGGGGTGATGTTCA
TGTGTATACATGTGTATATATGTGTGGGGGCCAGAGACTAATGTGGTTGT
CTTCCTTGCTCTCTTCATCTTATTTATTGTTTTGAATGTGCAGGATGGCT
GCTGGATAGATGACTGAGCATTTAAGAGCACTTGTTGCTCTTGGCAGACG
ACCTGGCTTCTAGTCCTAGCACCACTTGGAGGCTGACCGG

NCCCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGATTCTTTTTTTTTCTTTTTTTTTTTTT
GGGGGGGGGTGGTGGTTTGATACCGGTTTCTCTGTATANCCCTGACTGTC
CTGAAACTCACTTTGTATACTGGGGTGGCCTTGAACTTATATATCCACCT
GCCTCTGTCTTTCAGGTGCGGGACTTAAAGGCATGTGCCACCATCGTCCG
TTTCTCTTTTAACAATTCTTATATATCTAGCATGATTTTGCTGTATATCA
CTCTCACACCACTGTCTCTTTTTTTTTTATGCCCGAGTCTAATTTTCACA
TAACTGATATCATTTTCTTCTCCTTTATAATCTGTGTCTCCGGCCTTCTC
TCTGTTTCTTAACCATATCTTTTTCAATTTTTTTTTTTTAATAACTCCCC
CCCGCACTTGTATATTTTACCCCCTCCTTTAACCATGTCACATCTATATC
GTCTATAATTCCACTTTTGTTTATTTCTCCATTCTCACCTTTTATACATT
GCTGCTCTCCTTTTCTCATCTCACCTCCTTTCTCTCTGTATCCTACCCTC
ATCATGACCTTTTTATACTACGTCTTCCCTTTTCTCTTCTCTTTTCTTAT
ACTTATTCCTCCACCGTGTTATTTGTTTTTTTTCCTTTCTCTTTCACCTA
TTATCTCTTTTTTTCTTTTTTGTTTATCCTTTTTTGTTTTTTTTTACGTT
TTTTTAGTCTCTCCCCCTATTCCCTATTTTTTACTTTTGTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_n05.b1 MSMg01no523_n05.b1 CHROMAT_FILE:
MSMg01no523_n05.b1 PHD_FILE: MSMg01no523_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:53 2005
         (584 letters)



>mm_chr5_22241770_22242752
          Length = 983

 Score = 1004 bits (519), Expect = 0.0
 Identities = 567/583 (97%), Gaps = 6/583 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaatttacca-tctttccctttaagatttcaaatgggctggagagatggctct 63
           |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgaattgacaaatctttccctttaagatttcaaatgggctggagagatggctct 263

                                                                       
Query: 64  gctcttccagaggtcctgagttcaattcccagcatcctcatggtggctcacaaccatcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctcttccagaggtcctgagttcaattcccagcatcctcatggtggctcacaaccatcta 323

                                                                       
Query: 124 taatagaatctgacaccctcttctgatgtgtctgaagacagctacagtgtactcatatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatagaatctgacaccctcttctgatgtgtctgaagacagctacagtgtactcatatac 383

                                                                       
Query: 184 ataaataaaataaatcttttttta-aaagtttaaaacagtattatgtggcctattgactt 242
           |||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||
Sbjct: 384 ataaataaaataaatctttttttttaaagtttaaaacagtattatgtggcctactgactt 443

                                                                       
Query: 243 cttggcttctcttgggcatacatgacctctctgttataaaatggtaatttttctgaagct 302
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||
Sbjct: 444 cttggcttctcttgggcatacatgacccctctgttataaaatgctaatttt-ctgaagct 502

                                                                       
Query: 303 aggctct-agtttagcttagttttaagacttttgtctttaaccgtttcattaagatgtat 361
           ||||||| | ||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 aggctctca-tttagttttgttttaagacttttgtctttaaccatttcattaagatgtat 561

                                                                       
Query: 362 atagctatgcttttctttgagtaatcatactgttaagcttcttgaatctttcaatttatg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atagctatgcttttctttgagtaatcatactgttaagcttcttgaatctttcaatttatg 621

                                                                       
Query: 422 cctgtcatcaaatttgggtttattttttaaactcatttttattttttcaaaatgtggttt 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 622 tctgtcatcaaatttgggtttattttttaaactcatttttattttttcaaaatgtg-ttt 680

                                                                       
Query: 482 tttttggggggtgatgttcatgtgtatacatgtgtatatatgtgtgggggccagagacta 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttggggggtgatgttcatgtgtatacatgtgtatatatgtgtgggggccagagacta 740

                                                      
Query: 542 atgtggttgtcttccttgctctcttcatcttatttattgtttt 584
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtggttgtcttccttgctctcttcatcttatttattgtttt 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space:   558502
Effective search space used:   558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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