XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTAGAGTCTTGGCAGGCTAATAGCTAAAGGCTGCGATATTTGAAACTC
AGATCTGAACTACTGTCTGCTAGGTGCTGAGCCATTGGTACTCAAAACCT
AGAGAAATGTCTGTGCCTATAAGTTCTTAGCTTTGAAAGCCTATTGACAT
GAGCCATAATTCTTTAGACCTTAAGGCCTAGATCCATTAGTTGATAACAC
TATGGAGCTCTCACAAAAAGGGACTTATCATGACTGCACTGGAAAGACTC
AAAAAGCAAGTGAAAGAGTCAGATGCATATATTTGCACCCAACCAATGGA
CAGAAGCAGCTGACCTCTGTTGTTGAATTAGGGAAGGCTGAAAGAATTTG
AGGAGAAAGGTGATCCTATAGAAGGTCCATCAGTCTTAATTAATCTGGAC
CCCTGAAATCTCTCAAACACTGGACTACCAAACAAACACATACACCAGCT
GATATAAGGCCTCCAACAAACATACAGTAGAGGACTTCCAGATTTATGTT
CATTCAAGAGGCCCCAGGGAGTTTAGAGGTCAGATGGGGTAGAGGGTGGG
GGTACCCATGTGTTTGGGGAGAAGNTTTTGGGATGTGGACCANTTGGAAG
GTGGGAAGGGGANNNNNNNNNNNNNNNNNTNTNGTGGNNTNNNTTNNNGT
GNTTTNTNNTTNTTTTGTTTTGNTGGGTTTTTTTTTGTGTTTTTNTTTTT
GNTGTTTGTTTTTTTGTTTTTGG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCCCATCTGCAGACACCAAACCTTGACA
CTAGTGCTGATGCCAAGAAGCCCTGCACACAGATCCTAGTGTGGGTGTCC
TCTGAGAGGCTCTGCCAGCACCTGCCTAAGAGAGATGCAGATACTGTCAA
CTATTACACTGAGCCCCCTGGACCACAGTTGAAGAGTTATAGGAAGGACA
AAAGAAGATGAAGGGGATTGCAACCTTTTAGGAAGAGCAACAATATGAAC
TAACCAGACCCCTCCGAGCTGCCAGAGACTAAACCACCATCCAGAGAGTA
TATATGCATGGGTCCATGGCTTGTGCTACATATGTAGCAGAGGATTGCCT
TATCTGGCATTAATGGCATTAATGGGAGGAGATGGTTCTGTGGAGGCTTA
TTGCCTCAGTAAAGGGGGAAGCTAGAGTAGTGAGGTGGGAGTGAGTAGGG
GAAGCACTCCCTTACAGGCAAAGGGGAGGGGAGATCAGATTTGGGGGGGG
GGGAGGGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNN
NNGNNNNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no524_h21.b1 MSMg01no524_h21.b1 CHROMAT_FILE:
MSMg01no524_h21.b1 PHD_FILE: MSMg01no524_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:47 2005
         (534 letters)



>mm_chr5_59052109_59053042
          Length = 934

 Score =  971 bits (502), Expect = 0.0
 Identities = 524/532 (98%), Gaps = 2/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagagtcttggcaggctaatagctaaaggctgcgatatttgaaactcagatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagagtcttggcaggctaatagctaaaggctgcgatatttgaaactcagatc 264

                                                                       
Query: 65  tgaactactgtctgctaggtgctgagccattggtactcaaaacctagagaaatgtctgtg 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 265 tgaactactgtctgctaggtgctgagccattgatactcaaaacctagagaaatgtctgtc 324

                                                                       
Query: 125 cctataagttcttagctttgaaagcctattgacatgagccataattctttagaccttaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctataagttcttagctttgaaagcctattgacatgagccataattctttagaccttaag 384

                                                                       
Query: 185 gcctagatccattagttgataacactatggagctctcacaaaaagggacttatcatgact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcctagatccattagttgataacactatggagctctcacaaaaagggacttatcatgact 444

                                                                       
Query: 245 gcactggaaagactcaaaaagcaagtgaaagagtcagatgcatatatttgcacccaacca 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcactggaaagactcaacaagcaagtgaaagagtcagatgcatatatttgcacccaacca 504

                                                                       
Query: 305 atggacagaagcagctgacctctgttgttg--aattagggaaggctgaaagaatttgagg 362
           ||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||| |
Sbjct: 505 atggacagaagcagctgacctctgttgctgggaattagggaaggctgaaagaatttgaag 564

                                                                       
Query: 363 agaaaggtgatcctatagaaggtccatcagtcttaattaatctggacccctgaaatctct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaaggtgatcctatagaaggtccatcagtcttaattaatctggacccctgaaatctct 624

                                                                       
Query: 423 caaacactggactaccaaacaaacacatacaccagctgatataaggcctccaacaaacat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaacactggactaccaaacaaacacatacaccagctgatataaggcctccaacaaacat 684

                                                               
Query: 483 acagtagaggacttccagatttatgttcattcaagaggccccagggagttta 534
           |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 685 acagtagaggacttccagatatatgttcattcaagaggccccagggagttta 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)