Query= MSMg01no525_b08.b1 MSMg01no525_b08.b1 CHROMAT_FILE:
MSMg01no525_b08.b1 PHD_FILE: MSMg01no525_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:34 2005
(547 letters)
>mm_chr5_142994737_142995683
Length = 947
Score = 748 bits (387), Expect = 0.0
Identities = 396/399 (99%)
Strand = Plus / Minus
Query: 1 gtgaagccacgcccacagacagttttgagctcaggcattctgtttttagcctccatagtc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 399 gtgaagccacgcccacagacagttttgagctcaggcgttctgtttttagcctccatagtc 340
Query: 61 aaacagtatgctagagtttccttgaggtcctctggcctgagaaaaacccacacaaccccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaacagtatgctagagtttccttgaggtcctctggcctgagaaaaacccacacaaccccc 280
Query: 121 tcatcccttgaaagaggctcttgtaaagtcgagcacgctgaagtgtgaggggtctggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcatcccttgaaagaggctcttgtaaagtcgagcacgctgaagtgtgaggggtctggttt 220
Query: 181 ttgttttttaggatttatgtattcatattttacatgtatagatgttttgtctgcatatat 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tggttttttaggatttatgtattcatattttacatgtatagatgttttgtctgcatatat 160
Query: 241 gtgcaccaccacaagagtgcctggtacccactgaggccagtagacggtgtcaggattctc 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtgtaccaccacaagagtgcctggtacccactgaggccagtagacggtgtcaggattctc 100
Query: 301 agggccggagttacaggcatttgggagccacctgaggtgggtgggtgctggaaactgaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agggccggagttacaggcatttgggagccacctgaggtgggtgggtgctggaaactgaac 40
Query: 361 tcaggtcctttgcaagagctcttaactaagtgctgagcc 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tcaggtcctttgcaagagctcttaactaagtgctgagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_b08.g1 MSMg01no525_b08.g1 CHROMAT_FILE:
MSMg01no525_b08.g1 PHD_FILE: MSMg01no525_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:34 2005
(477 letters)
>mm_chr5_142856058_142856933
Length = 876
Score = 839 bits (434), Expect = 0.0
Identities = 466/486 (95%), Gaps = 17/486 (3%)
Strand = Plus / Plus
Query: 1 catgatagccagagcttgaaagagtgacactctctcaaatagaaaaagaaaaggccccca 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 199 catgatagccagagcttgaaagagtgacactctctcaaatagaaaaaaaaaa-------a 251
Query: 61 ---------caggcttgcctacaggccaattaatggaggcattttctcaactgagttccc 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaaaaaaacaggcttgcctacaggccaattaatggaggcattttctcaactgagttccc 311
Query: 112 tgttcccagacaaggtctcagtctatgcccatgtacacacttgtgtgcttatacccccac 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgttcccagacaaggtctcagtctatgcccatgtacacacttgtgtgcttatacccccac 371
Query: 172 accgcccaaaaagggatgtaaaatgacgtcatatagatgcaatcttacattaaaccttag 231
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 372 accgcccaaaaagggatgtaaaatgacatcatatagatgaaatcttacattaaaccttag 431
Query: 232 gagactcgtagacagcttgttctccctctcccttggagcatactaggcttcgcagagcag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagactcgtagacagcttgttctccctctcccttggagcatactaggcttcgcagagcag 491
Query: 292 gaaaaaaaaagtgtggcccataggtacaagacatccttggcaaacccgcctgcctagcac 351
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaaaaaaaa-gtgtggcccataggtacaagacatccttggcaaacccgcctgcctagcac 550
Query: 352 agcttccccacaccacatggctgttacaggctgcatttcgcaagcaacagtcaaaagaag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agcttccccacaccacatggctgttacaggctgcatttcgcaagcaacagtcaaaagaag 610
Query: 412 caggctgcacctcatctgtttccaattatcccagcactctgtgtgtttaacacagctatg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caggctgcacctcatctgtttccaattatcccagcactctgtgtgtttaacacagctatg 670
Query: 472 ctgttt 477
||||||
Sbjct: 671 ctgttt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
