Query= MSMg01no525_j09.b1 MSMg01no525_j09.b1 CHROMAT_FILE:
MSMg01no525_j09.b1 PHD_FILE: MSMg01no525_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:15 2005
(542 letters)
>mm_chr5_65607751_65608692
Length = 942
Score = 1017 bits (526), Expect = 0.0
Identities = 538/542 (99%)
Strand = Plus / Plus
Query: 1 aaacttgatttgatcctaagaggatctcttcttcagagaatctgcattgtcaatggctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacttgatttgatcctaagaggatctcttcttcagagaatctgcattgtcaatggctac 260
Query: 61 ctagcatcaccactgggaaaattattccatgaaccactatctattcctcagtaccctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagcatcaccactgggaaaattattccatgaaccactatctattcctcagtaccctggt 320
Query: 121 gtactgtcttttcagtccatacctcagtgccctactgtactgtctgaactaggctgcact 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactgtctttacagtccatacctcagtgccctactgtactgtctgaactaggctgcact 380
Query: 181 gactgaaatactcttggaatatctgcttaggcacagcacacagataaaccttccttggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgaaatactcttggaatatctgcttaggcacagcacacagataaaccttccttggtc 440
Query: 241 tgtactgtacagacagttggaaatgtgatgtatttgtcagctgttgttgtataacaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtactgtacagacagttggaaatgtgatgtatttgtcagctgttgttgtataacaaaat 500
Query: 301 atctcaaaatgtaggagcttgaaacatcagtgtttcattgttgttgacaaggaatccgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 atctcaaaatgtaggagcttgaaacatcagtgtttcattgttgttgacaaggaatccaga 560
Query: 361 tgcagcttcttggagtgcctctgcctcagaatctcccacaaggccgtttctaagctcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagcttcttggagtgcctctgcctcagaatctcccacaaggccgtttctaagctcact 620
Query: 421 cacgtagtgattggtagagttcagctccttgcagatttctgttcctatacagactcactc 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacgtagtggttggtagagttcagctccttgcagatttctgttcctatacagactcactc 680
Query: 481 tatccactgtaagtcctgatttcctaccatgtggatctctcccatggagtgtgctggagt 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatccactgtaagtcctgattccctaccatgtggatctctcccatggagtgtgctggagt 740
Query: 541 tg 542
||
Sbjct: 741 tg 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_j09.g1 MSMg01no525_j09.g1 CHROMAT_FILE:
MSMg01no525_j09.g1 PHD_FILE: MSMg01no525_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:15 2005
(576 letters)
>mm_chr5_65756403_65757385
Length = 983
Score = 721 bits (373), Expect = 0.0
Identities = 408/425 (96%), Gaps = 13/425 (3%)
Strand = Plus / Minus
Query: 158 catccacatacattcatagatatctacaacttcacttcaggggatctgatcttctggcac 217
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 983 catccacatacattcatagacatctacaacttcacttcaggggatctgatcttctggcac 924
Query: 218 cagacaggcacgtggtatatagatatccatgcaggtaaaataccaaatacatataaagta 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 cagacaggcacgtggtatatagatatccatgcaggtaaaataccaaatacatataaagta 864
Query: 278 aaatgaaaaaaaggcatttatgtatatatgtatgtatgtatacatgtgtgtgtatgtatg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aaatgaaaaaaaggcatttatgtatatatgtatgtatgtatacatgtgtgtgtatgtatg 804
Query: 338 tgtgtgtgtgcaagtacacttgtgtgtgtaggtgcctaagtgtgtgcatgcataagtaca 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgtgtgtgtgcaagtacacttgtgtgtgtaggtgcctaagtgtgtgcatgcataagtaca 744
Query: 398 gggatcaga--gtgtgcataagtacatggatcatagttgtgcatgcataagtacatggat 455
||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct: 743 gggatcagagtgtgtgcataagtacatggatcagag-tgtg--tgcataagtacatggat 687
Query: 456 cagagtgtg----tgcataagcacatggatcaga----gtgtgtgcataagtacatggat 507
||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 686 cagagtgtgtgcatgcataagtacatggatcagagtgtgtgtgtgcataagtacatggat 627
Query: 508 cagagtgtgtgcatgcataagtacatggatcagagtatgtgcatgcataagtacatggat 567
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 626 cagagtgtgtgcatgcataagtacatggatcagagtgtgtgcatgcataagtacatggat 567
Query: 568 cagag 572
|||||
Sbjct: 566 cagag 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 983
Length adjustment: 10
Effective length of query: 566
Effective length of database: 973
Effective search space: 550718
Effective search space used: 550718
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
