BAC Information

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BAC

Clone NameMSMg01-525L19
Chromosome5 (Build37)
Map Location 26,998,122 - 26,998,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525L19.T7 (MSMg01no525_l19.b1)MSMg01-525L19.TJ (MSMg01no525_l19.g1)
ACCAG595500AG595501
length757725
length of high quality
(start - end)		542 (59 - 600)58 (83 - 140)
definitionCHROMAT_FILE: MSMg01no525_l19.b1 PHD_FILE: MSMg01no525_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:27 2005CHROMAT_FILE: MSMg01no525_l19.g1 PHD_FILE: MSMg01no525_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
CTTTCTCGCCACCCCCCTGCCTCAGCTAGGACTAATGACACTGAATTACC
ACCACTGTTTATTTTTATGCTTACAGAGGCAAATCTGTTTGACAAAAACT
GGTAAAATACCAGCTGCTTTTCCTGATTGTTGTTATTTTAATGGTGACCT
TCAGGGTGTAGAACAAAGGGCTGACTGGTGACAGGACAGGGTGTGGAGTG
TAAACAGACAAGGTGTCCAGGATGTCTGTCCCTTTGCTCTTCCCTCTCTA
GTGATCTTTTTGCATCTGCAGTGAAGATGCTAGAAATGCTCTTTTCTTTT
CCTTCTGATGCACTGGGAAGAAAATTTGTAATTAGTTTGATTGGAATCTG
ATAAGCTGGAAGTGGCTTACGCCTCTTCCAAACATTTCATAAGTGATGAT
GCCTCAAAGGATGCTCTGTGGACCTTCTGAGCATGTGTGTGGTTACCTTA
TATAGGAAATAATGTCAGACTTTAAAGCTCTCCTGAGCCTTACTGATCAG
ACTGTGGCTTTCTTCAGGGCAAATGTATGTTGGAACCACCTCGTTATGTT
TTAGAGAATATCTGTATCAGTTGCTTTTGTCATTGCTGTAACAGAACACC
TGCCAAGGCTGCTTTTAAAAATGCATGCTATTCATTTGTTTTACAAGGAT
TTAGCCTGTTTCTCTGTTTTTCTCTGTCTCTCTGACCCTCTGTCTCACTG
TCTCTGG

TCTTTTAGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGAGCAACACAGTAC
TTTTCTTCCTTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCGTCCTTTC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCAGACATACGGAGGGAGGG
AGGGGGGGGGGGGGTGGCGGGCGGGGGGGGTGGGGGGCGGTGGGGGGTGG
GGGGGGGGGGGCGGGGGGGGGCGTCGGGGGGGGTGCGTGTGTGGGAGGGT
GGTGGGGGAGAGGGGAGTGAGGGGGGGGGGGTGGNTATCCGGGTGGGCGG
AGGGGGGCGCGGGAAGGGGGGGGAGGGGAGGTCCGGGGGCGGGCGGGGGG
GGGGGAGGCACCCACTGGGGGTGGGCCTGGGGATGGGTAATTCCCCCTAA
CAGGGGGGGGGAGGGGGGTTCCAAGGGGGGGGGGTAAGGGGGGCGGGAAG
GAGAGGGGCGGGGGAGAAGGTGTGGAGGGGGGGGAAAGAAGGGGAGGGAC
ACGGTGGGGGGGGGGGGGAGGGGAGGCTGGGGGGGGGGAGGGGAGTGGAT
AGGGGGGGGGGGGGAGATGGGGGGGGAGGGGGGGGCCAAGGGGGGGGGGG
GCTAATGGGGGGGGGGGGAAAAGGGTTTGGGGGGGGGGGGGGGAAGAAGG
GGGGTGGCGCGGTAAGAGGGGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_l19.b1 MSMg01no525_l19.b1 CHROMAT_FILE:
MSMg01no525_l19.b1 PHD_FILE: MSMg01no525_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:27 2005
         (542 letters)



>mm_chr5_26997918_26998859
          Length = 942

 Score =  882 bits (456), Expect = 0.0
 Identities = 516/536 (96%), Gaps = 2/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ccccctgcctcagctaggactaatgacactgaattaccaccactgtt-tatttttatgct 63
           ||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||
Sbjct: 205 ccccctgcctcagctaggactaatgacactgaattactatcactgttcta-ttttatgct 263

                                                                       
Query: 64  tacagaggcaaatctgtttgacaaaaactggtaaaataccagctgcttttcctgattgtt 123
           |||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tacagaggcaaacctgtttgagaaaaactggtaagataccagctgcttttcctgattgtt 323

                                                                       
Query: 124 gttattttaatggtgaccttcagggtgtagaacaaagggctgactggtgacaggacaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 gttattttaatggtgaccttcagggtgtagaacaaagggctgactggtgtcaggacaggg 383

                                                                       
Query: 184 tgtggagtgtaaacagacaaggtgtccaggatgtctgtccctttgctcttccctctctag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtggagtgtaaacagacaaggtgtccaggatgtctgtccctttgctcttccctctctag 443

                                                                       
Query: 244 tgatctttttgcatctgcagtgaagatgctagaaatgctcttttcttttccttctgatgc 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct: 444 tgatctttttgcatctgcagtgaaggtgctagaaatgctcttttcttttccatctaatgc 503

                                                                       
Query: 304 actgggaagaaaatttgtaattagtttgattggaatctgataagctggaagtggcttacg 363
           ||| ||||||||||||||||||||||||  |||||||||| |||||||| ||||||||| 
Sbjct: 504 acttggaagaaaatttgtaattagtttgcctggaatctgacaagctggatgtggcttaca 563

                                                                       
Query: 364 cctcttccaaacatttcataagtgatgatgcctcaaaggatgctctgtggaccttctgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 cctcttccaaacatttcataagtgatgatgcctcaaaggatgctctgaggaccttctgag 623

                                                                       
Query: 424 catgtgtgtggttaccttatataggaaataatgtcagactttaaagctctcctgagcctt 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacgtgtgtggttaccttatataggaaataatgtcagactttaaagctctcctgagcctt 683

                                                                   
Query: 484 actgatcagactgtggctttcttcagggcaaatgtatgttggaaccacctcgttat 539
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 actgatcagactgtggctttcttcagggcaaatgtatgttggaaccaccttgttat 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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