Query= MSMg01no526_a21.b1 MSMg01no526_a21.b1 CHROMAT_FILE:
MSMg01no526_a21.b1 PHD_FILE: MSMg01no526_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:52 2005
(675 letters)
>mm_chr5_13012746_13013821
Length = 1076
Score = 1183 bits (612), Expect = 0.0
Identities = 658/678 (97%), Gaps = 9/678 (1%)
Strand = Plus / Plus
Query: 7 attctctctctccacat--------tctctgtgtgtgtgtgtttatatgtttatgaaaat 58
||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 199 attctctctctccacattctctctctctctctgtgtgtgtgtttatatgtttatgaaaat 258
Query: 59 gtatatatgtgtatatggtatctgcttgctagtgaaaactacaagacttaaaatgccaag 118
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 gtatatatgtgtatatggtatctgcttgcttgtgaaaactacaagacttaaaatgccaag 318
Query: 119 ttttattattgtttgccttattctcatgagacatggtctctctgggaacctggagctccc 178
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 319 ttttattattgtttgccttattcccatgagacatggtttctctgggaacctggagctccc 378
Query: 179 tgtgcctagtctaggctagcatccagcaaatgcagaaacccttccatctctgtgtgaagt 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtgcctagtctaggctagcatccaacaaatgcagaaacccttccatctctgtgtgaagt 438
Query: 239 gtctattgctgaaaacccatttaaactcctcttccacctatgatatcttttgcctttaat 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 gtctattgctgaaaacccatttaaacttctcttccacctatgatatcttttgcctttaat 498
Query: 299 ttttcccatgctctttagcacactcttttctttttcttctttgttggtcatctcatgcac 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttcccatgccctttagcacactcttttctttttcttctttgttggtcatctcatgcac 558
Query: 359 attgtgttttgttgtgggctccaaaatctatttaaattaacaagaaagtcaatctcaatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 attgtgttttgttgtgggctccaaaatctatttaaattaacaagaaagtcaatctcaatt 618
Query: 419 ttgtttgtatttttagtctcaaaatcatgggcgaaggaagacaatgtttaaagaagacaa 478
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 619 ttgtttgtatttttagtctcaaaatcatgggcaaatgaagacaatgtttaaagaagacaa 678
Query: 479 cgtctagtagtcaagttggctgggagacctatacattccactgattctgttaccattcta 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cttctagtagtcaagttggctgggagacctatacattccactgattctgttaccattcta 738
Query: 539 gagaggaatgagataagttataactagtcaacttcctcatcatcttatttgttgtaagaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gagaggaatgagataagttataactagtcaacttcctcatcatcttatttgttgtaagaa 798
Query: 599 acaacaaaacaaaacaaaaccagtcaactggttaatcctttttt-gggggagacgagtct 657
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 799 acaacaaaacaaaacaaaaccagtcaactggttaatcctttttttgggggagacaagtct 858
Query: 658 ctaatttttccatgctac 675
||||||||||||||||||
Sbjct: 859 ctaatttttccatgctac 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_a21.g1 MSMg01no526_a21.g1 CHROMAT_FILE:
MSMg01no526_a21.g1 PHD_FILE: MSMg01no526_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:52 2005
(639 letters)
>mm_chr5_13173877_13174909
Length = 1033
Score = 1162 bits (601), Expect = 0.0
Identities = 627/639 (98%), Gaps = 6/639 (0%)
Strand = Plus / Minus
Query: 1 atcttgatgacaaatacacaatttcagaaaaagctgagttatgtttttgactgatgaaaa 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 833 atcttgatgacaaatacacaatttcagaaa------agttatgtttttgactgatgaaaa 780
Query: 61 atgaagtctttgtaaataaattgaaaattaaccctgcactgaaaagagttgaaaaaatac 120
||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 779 atgaagtatttgtaaataaattgaaaaataacccttcactgaaaagagttgaaaaaatac 720
Query: 121 ataagcattaaatatgttcaataattctctaagtctgaaactaataaaatatgttttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ataagcattaaatatgttcaataattctctaagtctgaaactaataaaatatgttttggt 660
Query: 181 agtgataaaagatgttaataatatcctcaaaatctactaaatatgtattggctatctata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agtgataaaagatgttaataatatcctcaaaatctactaaatatgtattggctatctata 600
Query: 241 ttctctacactttcaaatggaagattaaaatgaaatgtatacagataaactgcaaaaact 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttctgtacactttcaaatggaagattaaaatgaaatgtatacagataaactgcaaaaact 540
Query: 301 atagagaatgtgctggaaggatctcatgtgtgtaggtatgtgtacgtgtataaggtatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atagagaatgtgctggaaggatctcatgtgtgtaggtatgtgtacgtgtataaggtatat 480
Query: 361 tacaaaataaaggtagagaataatgacctgtgatgcttgtaattaacatttcaaggacgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tacaaaataaaggtagagaataatgacctgtgatgcttgtaattaacatttcaaggacgt 420
Query: 421 ttatgcatgtaacatataaagaagttgtgaggggatctattgaagaccagttctataatt 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcatgcatgtaacatataaagaagttgtgaggggatctattgaagaccagttctataatt 360
Query: 481 gcagcctgtctgaatagtaattatacctgcatgttgtcaaaagaccatggagttgcatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gcagcctgtctgaatagtaattatacctgcatgttgtcaaaagaccatggagttgcatgg 300
Query: 541 gccgtatcattttttaacgcaaaatgtcaggaagacattgaaatgtgagttacttcatta 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 299 gccgtatcattttttaacgcaaaatgtcaggaagacattgaaatgtgagttatttcatta 240
Query: 601 tataaatcataacagagggacagccttgtgtctttcaaa 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tataaatcataacagagggacagccttgtgtctttcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1033
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1023
Effective search space: 643467
Effective search space used: 643467
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
