XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAG
GTGGAATTTTAGGTTGAGGGAAGGAGACTGAGTTGGAAAATACAGAAACC
TGCACACACAGGGCACACCCCTGCACTATGGCATGCTTTGGAGCCTTGCT
CTGAGCATGAACAGAACCAGGGGGTCTTTTGGAATGGGATGTTGGTATTT
TCCATTATGCAGTTCTCCATTATGCCTTCTCACCGTGGACTAGCAGTAAG
AATGATGCCGCCTGCTGACGATCAGGGTACCTGAACTGCCACTTTTGTAT
TGTTTCCATTTTAACATTTATAATAAAGGTATTTTTAAAGATTAAAAGCA
TATTAAAGTATGTGTACTTTATGGTTTTGAAGTAGCTGGGGGCGGGGGGT
NGTAGAGGAAGTTGCAAACCCCTCATAGTATAGCCAATAGTGTGACTTAT
TACAGACACAGTTTAATATACCATGATTTGTCTGGGGATTCCCTGTGATG
CACATCCCCACCACTCCCAACACTCTGGAACCATTTGCATTTGCCTCCTG
GGATACTGAATTTCCTGGCTCCATTCACCACCTTTCCACTCACCGCCTTT
TCACCTTTGATTCCCGAACTGTCTTTTTTCTCCTGCTCCCCAGCAACATT
GCTTCCAGGATGTCTCCTCTCTGCTTGACCTACCGAAACACCATTTGTAT
GGGAGAGACTCTGAAGTTCATGGGTTCTGCCCAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGAGCCAGGTATGGTGGCACAGGATTTTAAT
CCCAGCACTCAGGAGGCAAAGGCACGAGGATTTCTGAGTTTGAGGCCAGC
CTGGTCTACAAAGTGAATTCCAGGACAGCCAGGGCTATACAGAGAAACCC
TGTCTCAAAAAACAAACAAACAAACAAAACAAAACAAAAAACCAAAACAA
ACAAACAAACAAACAAACAAAAGATTTCTCTGTTTAGGGAGGAGAGGCCC
TTGGTCTTGAGAAGATCATATGCCCTAGTACAGGGGAATGCCAGGGCCAG
GAAGCAGGAGGGGATGGGTTGGGGAGCAGAGCAGGGGGAGTGTATAGGGG
ACTTTCGGGATATCATTTGAAATGTAAATGAAGAAAATGTCTAATAAAAA
AAAAGAATTCTCTGTTTAGATCTGTTCCATGTTTTTAATTAGATTATTTG
GTTTATTGATGTCTAGTTTCTTGAGTTCTTTATATATTTGGATATTATTC
TTCTAACAAATGGGGAGTTAGTTTTTAAAAAAGCTTTTACCATTCTGTAG
GTTGTGACTTTGTCAGATTGATATGTTCTTTGCCTTACACAAGCTTTTCA
ATTTCATGAATTGTTCATTAATTGTTGATCTTTAATGCCTATGCTACTGA
TGTTCTATTCCGAAAGCCCTCTTTTGTGCCAGGGGATTTCAGGGT

Query= MSMg01no526_d18.b1 MSMg01no526_d18.b1 CHROMAT_FILE:
MSMg01no526_d18.b1 PHD_FILE: MSMg01no526_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:05 2005
         (696 letters)



>mm_chr5_54053953_54055048
          Length = 1096

 Score = 1193 bits (617), Expect = 0.0
 Identities = 667/696 (95%), Gaps = 23/696 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaggtgg--aattttagg-ttgagggaaggagactgagttggaaaatacaga 61
           |||||||||||||||  ||    ||| |||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccagaggtggtaaa----agggttgagggaaggagactgagttggaaaatacaga 261

                                                                       
Query: 62  aacctgcacacacagggcacacccctgcactatggcatgctttggagccttgctctgagc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacctgcacacacagggcacacccctgcactatggcatgctttggagccttgctctgagc 321

                                                                       
Query: 122 atgaacagaaccagggggtcttttggaatgggatgttggtattttccattatgcagttct 181
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||      
Sbjct: 322 atgaacagaaccagggcgtcttttggaatgggatgttggtattttccattatgc------ 375

                                                                       
Query: 182 ccattatgccttctcaccgtggactagcagtaagaatgatgccgcctgctgacgatc-ag 240
                    ||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 376 ---------cttctcaccgtggaccagcagtaagaatgatgccgcctgctgacgctccag 426

                                                                       
Query: 241 ggtacctgaactgccacttttgtattgtttccattttaacatttataataaaggtatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggtacctgaactgccacttttgtattgtttccattttaacatttataataaaggtatttt 486

                                                                       
Query: 301 taaagattaaaagcatattaaagtatgtgtactttatggttttgaagtagctgggggcgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taaagattaaaagcatattaaagtatgtgtactttatggttttgaagtagctgggggcgg 546

                                                                       
Query: 361 ggggtngtagaggaagttgcaaacccctcatagtatagccaatagtgtgacttattacag 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggggtggtagaggaagttgcaaacccctcatagtatagccaatagtgtgacttattacag 606

                                                                       
Query: 421 acacagtttaatataccatgatttgtctggggattccctgtgatgcacatccccaccact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 acacagtttaatataccatgatttgtctggggattccctgtgatgcacatccccaccact 666

                                                                       
Query: 481 cccaacactctggaaccatttgcatttgcctcctgggatactgaatttcctggctccatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cccaacactctggaaccatttgcatttgcctcctgggatactgaatttcctggctccatt 726

                                                                       
Query: 541 caccacctttccactcaccgccttttcacctttgattcccgaactgtcttttttctcctg 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 727 caccacctttccactcaccgcctttccacctttgattcccgaactgtcttttttctcctg 786

                                                                       
Query: 601 ctccccagcaacattgcttccaggatgtctcctctctgcttgacctaccgaaacaccatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctccccagcaacattgcttccaggatgtctcctctctgcttgacctaccgaaacaccatt 846

                                               
Query: 661 tgtatgggagagactctgaagttcatgggttctgcc 696
           ||||||||||||||| ||||||||||||||||||||
Sbjct: 847 tgtatgggagagactttgaagttcatgggttctgcc 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)