Query= MSMg01no526_g22.b1 MSMg01no526_g22.b1 CHROMAT_FILE:
MSMg01no526_g22.b1 PHD_FILE: MSMg01no526_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:21 2005
(607 letters)
>mm_chr5_49527918_49528923
Length = 1006
Score = 1052 bits (544), Expect = 0.0
Identities = 589/604 (97%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 4 ggaattccacaggcactcaccataaactggaaggaacagcatcacatttgatcttgccaa 63
|||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 806 ggaattccacaggcacacaacataaactggtaggaacagcatcacatttgatcttgccaa 747
Query: 64 cttcaccctttcaaagattccattctgtgcctcccaagaggcttagtgacttccttcttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cttcaccctttcaaagattccattctgtgcctcccaagaggcttagtgacttccttcttt 687
Query: 124 ctcttttccaggcagcagagtaaagtgtgtatgaaggaacttataaaattccctttggca 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 686 ctcttttccaggcagcagagtaaagtgtgtatgaaagaacttataaaattccctttggca 627
Query: 184 tttctgttgtcctttgattcctccttgatgttactttggggaaaaaatgtattttacctg 243
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 626 tttctgttgtcctttgattcctccttgatgttactttggggaaaaaa-gaattatacctg 568
Query: 244 taggcttttattccttgtccctctttctctcttcctttctgattctctcacagctttgag 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 567 taggcttttattccttgtccctctttctctcttcgtttctgattctctcacagctttgag 508
Query: 304 atgcccaggctgcctatgaatagtgcaaaactgtaagataaatgactaaaaaaaggtcaa 363
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 507 atgcctaggctgcctatgaatagtgcaatactgtaagataaatgactaacaaaaggtcaa 448
Query: 364 cctgccaagacaaaatagaaaaagcaaatatttttttaaaatgtcatattctgtgacaag 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 447 cctgccaagacaaaatagaaaaagcaaatatttttttaaaaagtcatattctgtgacaag 388
Query: 424 tatggataacaattgacttccataacatccctccagaacttttctttaaaagtaagggta 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 387 tatggataacaattgacttccataacatccctccagaatttttctttaaaagtaagggta 328
Query: 484 ttcttaatactggagatttgtttaaagacataattatgtttgatgatgatgtgggtaaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcttaatactggagatttgtttaaagacataattatgtttgatgatgatgtgggtaaaa 268
Query: 544 caccacatagctggggatttatagtgcttttgaatgaaaggagggaaaagcaatatactc 603
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 267 caccacatagctggggatttattgtgcttttgaatgaaaggagggaaaagcaatgtactc 208
Query: 604 tcag 607
||||
Sbjct: 207 tcag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_g22.g1 MSMg01no526_g22.g1 CHROMAT_FILE:
MSMg01no526_g22.g1 PHD_FILE: MSMg01no526_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:21 2005
(580 letters)
>mm_chr5_49383114_49384092
Length = 979
Score = 1083 bits (560), Expect = 0.0
Identities = 575/580 (99%), Gaps = 1/580 (0%)
Strand = Plus / Plus
Query: 1 aagaggtatataaagaggaaatgttaacaaggcctttccatctttctgagtaggtgccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaggtatataaagaggaaatgttaacaaggcctttccatctttctgagtaggtgccta 260
Query: 61 agttaggaataaggttgcaccattgtagaaacaacaatgacatacatgaagaactttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttaggaataaggttgcaccattgtagaaacaacaatgacatacatgaagaactttttg 320
Query: 121 aagttcacaaacatcatttgtactttgatgtgaaacaaaatcatccttaaggatctctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttcacaaacatcatttgtactttgatgtgaaacaaaatcatccttaaggatctctga 380
Query: 181 taattagtcaatcaatttttagcttatgcagactctcaaattcaaaataaaggatgatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattagtcaatcaatttttagcttatgcagactctcaaattcaaaataaaggatgatga 440
Query: 241 actaaattctttgaatctctcattattaacttacagtatttgcataaatgtgaacaaaga 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaaattctttgaatctctcattattaacttacagtatttgcataaatgtgaacaaaga 500
Query: 301 tggatggttttaaatgactgtcactaattaagatcctgaagcaaacaaaaggctcataaa 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggatggttttaagtgactgtcactaattaagatcctgaagcaaacaaaaggctcataaa 560
Query: 361 acattatgtacaaaggcagacccattagcatatcttatctcatatcttcttcacaatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acattatgtacaaaggcagacccattagcatatcttatctcatatcttcttcacaatgac 620
Query: 421 atgaaaaaaatattccaattacacctgaagcaataatgtagcaaaagcaataaatcattt 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 at-aaaaaaatattccaattacacctgaagcaataatgtagcaaaagcaataaatcattt 679
Query: 481 gaaggaatataggagaggttatttttaaacagaccaatttaggaattgggattgtcattc 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaggaatgtaggagaggttatttttaaacagaccaatttaggaattgggattgtcattc 739
Query: 541 caatataaacataaaatggaattatatttttagtaataaa 580
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 caatataaacataaaatggaattatatttttagcaataaa 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
