BAC Information

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BAC

Clone NameMSMg01-526N14
Chromosome5 (Build37)
Map Location 15,195,599 - 15,196,254
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526N14.T7 (MSMg01no526_n14.b1)MSMg01-526N14.TJ (MSMg01no526_n14.g1)
ACCAG596342AG596343
length729730
length of high quality
(start - end)		612 (34 - 645)657 (67 - 723)
definitionCHROMAT_FILE: MSMg01no526_n14.b1 PHD_FILE: MSMg01no526_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:54 2005CHROMAT_FILE: MSMg01no526_n14.g1 PHD_FILE: MSMg01no526_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGAGGATCCGCGGAATTCTG
TGACATTGCGGGAGGGGAATTTATCCCTTATGATAAGGATCAGGGGTGGC
TTGGTGCTTTTTAGGTTTCTATTTGCCATGTGCAACAGCTTCAAGAGCCC
ATTTCTGATGTCCTTGGAATCATTATGTTCCCATGATGATGCACTCAGGC
ATGCCTGGAAATAACCAGAACACTTGCCAGAGAGCTTGATTTCTATAAGG
GAGGGAATATTGCTAATTTATATAGCAGGATATTTGGTCACATTGTAAAC
CCAAAGACTGTGTTGATTCCAAAAAAATAAAAATAATAAAAAAAAATTTT
TTTTATGGTGTAGCTCAGCCCTAGCACAGACCTGTAACCCAAGAGCTTTC
TGTTCAGTGTACATTTCTGACCTGTGGCTCAGCCCTATCACAAACATTTA
TTGCAAAGCAAAATAAAGTCAACTCCAGGTCAAGATTTAGAGCAATTAAC
CAGTTGAAAGAGAATGAATATAACTAAACAGAAGGAAGGTATTTTTTTTG
TTTTTTGTTTTTTTGTTTTTTCTTTTTCCTTTTTTCTTTTTTCTTTTGTT
CTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT
CTGAGGAACAGGCTGTCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCC
CAGTGCTGGAATTACAGGCATGCCCACCA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCTGCTCATCACAAGCCGTCACTAACAGAATG
TGGGTGGTGAGAATTAGTGCTTATTTGTTGATGAAGAAGTAAAAACATAC
ATACATCAGGGACCACATTTTGAATGTGTTTTGTGGTACAGCCTAGGTTT
TGGGTGTTTATGAACAGTACACTTGAGGAAACCTTGGAATTGACAGCTTT
ATGTGCTCTACATTAAAATATAACTTTTACATTTGCTACATTTACATGAC
GATGAATAAACACCAATGATTGCTTACTGTGTTATAACACTGTTGTTAGT
GTTAATCCACGTGACTGTCAGGATGTACACAGAGATGGTCTTAACTTAGC
AACTTATCTTCAGCTATTTTTATAGACTGTCAAGACAACAGCCATGATAG
TATTATATTAGGCCTGTCATGCTTTTAAATGTTAAAAAATGCTTGTATGT
ATAAAATATAAAATTTCAAAAGAGCAGTAGCTCATTGAGATTGTTATAGA
TTAAACTTTATTCATTTAAAAAGTAAACTTTAATTTTGTTAAGGAATTTA
AACAAAAAGAACCCAATAAAAAGAAATAATATACTCTCTTTTTATACAAA
ACTTGTAATTTAAAGCATGTTATTTTGTAAATTTTTTCTAAGCTCAGATC
AATATTTTAAGAAATATTAGTTAATCTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_n14.g1 MSMg01no526_n14.g1 CHROMAT_FILE:
MSMg01no526_n14.g1 PHD_FILE: MSMg01no526_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:54 2005
         (657 letters)



>mm_chr5_15195399_15196454
          Length = 1056

 Score = 1123 bits (581), Expect = 0.0
 Identities = 638/657 (97%), Gaps = 1/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaattagtgcttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 856 tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 797

                                                                       
Query: 61  gttgatgaagaagtaaaaacatacatacatcagggaccacattttgaatgtgttttgtgg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 737

                                                                       
Query: 121 tacagcctaggttttgggtgtttatgaacagtacacttgaggaaaccttggaattgacag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 736 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 677

                                                                       
Query: 181 ctttatgtgctctacattaaaatataacttttacatttgctacatttacatgacgatgaa 240
           |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 676 ctttatatgctctacattaaaatataacttttatatttgttacatttacatgacgatgaa 617

                                                                       
Query: 241 taaacaccaatgattgcttactgtgttataacactgttgttagtgttaatccacgtgact 300
           ||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct: 616 taaaccccaatgattgcttactgcgttataatactgttgttagtgttaacccacgtgact 557

                                                                       
Query: 301 gtcaggatgtacacagagatggtcttaacttagcaacttatcttcagctatttttataga 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 556 gtcaggatgtacacagagatggtcgtaacttagcaacttatcttcagctatttttataga 497

                                                                       
Query: 361 ctgtcaagacaacagccatgatagtattatattaggcctgtcatgcttttaaatgttaaa 420
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 ctgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgttaaa 437

                                                                       
Query: 421 aaatgcttgtatgtataaaatataaaatttcaaaagagcagtagctcattgagattgtta 480
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 436 aaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtta 377

                                                                       
Query: 481 tagattaaactttattcatttaaaaagtaaactttaattttgttaaggaatttaaacaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 376 tagattaaactttattcatttaaaaagtaaactttaattttgttaaggaatttaaacaac 317

                                                                       
Query: 541 aagaacccaataaaaagaaataatatactctctttttatacaaaacttgtaatttaaagc 600
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 316 aagaacccaataaaaagaaataatatactatctttttatacaaaacttgtaatttaaagc 257

                                                                    
Query: 601 atgttattttgtaaattttttctaagctcagatcaatattttaagaaatattagtta 657
           ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgttattttgtaaa-ttttactaagctcagatcaatattttaagaaatattagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space:   676762
Effective search space used:   676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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